Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h04
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   1.3  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    24   2.3  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   5.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    23   5.3  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    23   7.0  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    23   7.0  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    22   9.3  

>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 139 IVVLRSSLEHSFESGFSRDSS 77
           I + R S+ H  +SG SRDSS
Sbjct: 280 IALQRRSVHHLHDSGISRDSS 300


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  IFFV*RNFRSIGWGLSVNYLEKNQIQMNVQG 120
           I +  R+F    W L  N+++K Q+++ V G
Sbjct: 88  IVYTFRSFDEAEWSLFKNFIDKLQLEIPVIG 118


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 90  EKPDSNECSRLL 125
           EKPDSN C  LL
Sbjct: 262 EKPDSNNCGFLL 273


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 21  NNYFLRIKKLPFNRMGIICELSREKPDS 104
           +NY ++ KK P  +  +  E +  KP S
Sbjct: 533 DNYLIKSKKEPIQQKSVSSETTLVKPSS 560


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 36  RIKKLPFNRMGIICE 80
           RI+++PF+R+G  CE
Sbjct: 97  RIEEIPFSRIGGRCE 111


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 182 FFFQIYDIIYKISVNS 135
           + F +YD++YK S N+
Sbjct: 19  YTFNLYDLLYKASENA 34


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 126 AVALNIHLNLVFLEIVHR*SPS 61
           A+A NI +  +FL +VH  SP+
Sbjct: 619 ALADNIDIVTIFLSLVHPPSPA 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,850
Number of Sequences: 5004
Number of extensions: 10108
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)