Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3h04
         (183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    30   0.23 
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064...    26   3.7  
12_02_0491 + 19648754-19650021,19650135-19650248,19650871-196514...    25   6.5  

>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 1   ILKNYIEIIIFFV*RNFRSIGWGLSVNYLEKNQIQM 108
           I+KNY+   + F+  N +   W L+V  +EK QIQ+
Sbjct: 602 IVKNYLHHELIFIPINMKDNHWYLAVVNIEKKQIQV 637


>12_01_1031 -
           10605581-10606088,10606360-10606420,10606448-10606491,
           10606664-10608382,10609848-10610791
          Length = 1091

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 27  YFLRIKKLPFNRMGIICELSREKPDSNECSRLL 125
           YF+ I+ L  + M  I  +SR  PD+N CSR+L
Sbjct: 316 YFIIIEDLWASSMWDI--VSRGLPDNNSCSRIL 346


>12_02_0491 +
           19648754-19650021,19650135-19650248,19650871-19651427,
           19651446-19651529,19651566-19651783,19652004-19652309
          Length = 848

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 55  NGSFFIRRK*LFQYNFS 5
           NG +FI R  LF+YN+S
Sbjct: 303 NGIYFIERGTLFRYNYS 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,635,765
Number of Sequences: 37544
Number of extensions: 44947
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)