Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3h03
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.13
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 30 0.30
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.40
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 29 0.53
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 27 3.7
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 27 3.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 3.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.5
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 26 6.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.5
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 26 6.5
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 8.6
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 25 8.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 185 PFPKPIVGKPCEPPTPSGAPPAQRAPVA 268
P PKP V P P PSGAPP + VA
Sbjct: 1122 PVPKPSVAAP-PVPVPSGAPPVPKPSVA 1148
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 185 PFPKPIVGKPCEPPTPSGAPPAQRAPVA 268
P PKP V P P PSGAPP + VA
Sbjct: 1141 PVPKPSVAAP-PVPAPSGAPPVPKPSVA 1167
Score = 31.1 bits (67), Expect = 0.17
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 185 PFPKPIVGKPCEPPTPSGAPPAQRAPVA 268
P PKP V P P PSGAPP + VA
Sbjct: 1103 PVPKPSVAVP-PVPAPSGAPPVPKPSVA 1129
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 185 PFPKPIVGKPCEPPTPSGAPPAQRAPV 265
P PKP G P PP PS APP + V
Sbjct: 1180 PVPKPAAGVPPVPP-PSEAPPVPKPSV 1205
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +2
Query: 185 PFPKPIVGKPCEPPTPSGAPP 247
P PKP VG P PP PS APP
Sbjct: 1199 PVPKPSVGVPPVPP-PSTAPP 1218
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 185 PFPKPIVGKPCEPPTPSGAPPAQR 256
P PKP V P P SG PP +
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPK 1183
Score = 22.2 bits (45), Expect(2) = 5.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 185 PFPKPIVGKPCEPPTPSGAPP 247
P P P P P PSGAPP
Sbjct: 1065 PVPAPSSEIP-SIPAPSGAPP 1084
Score = 21.8 bits (44), Expect(2) = 5.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 224 PTPSGAPPAQRAPVA 268
P PSG PP + VA
Sbjct: 1086 PAPSGIPPVPKPSVA 1100
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +2
Query: 509 SSQSSAPIPVESNRLGLLRCYKDPTHFSENPPKVRPSIHPPAPIHTGVTPQSIKTW 676
+ +S +PIP + R G + T EN K PP P H P +K W
Sbjct: 126 TQKSESPIPQQVKRDGTTDAKNEETTKPENNEKDDFEEEPPLPKHKISVPDVLKLW 181
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.40
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Frame = +2
Query: 185 PFPKPIVGKPCEPPTP---SGAPPAQRAPVAPYCHCDAHSY---SPRVEQYKQL----LE 334
P P PI+G P PP P +GA P P P Y +P+ E ++ L
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLT 811
Query: 335 KEQKLCQDYEQLRKQ 379
+EQK+ E+ RKQ
Sbjct: 812 EEQKI--QLEEARKQ 824
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 29.5 bits (63), Expect = 0.53
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 245 PAQRAP-VAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVTNDILDHPCD 421
P +R P V CH D H+ S ++ +EKE + D ++RK + +D +H D
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASD--EHFGD 200
Query: 422 D 424
D
Sbjct: 201 D 201
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 2.8
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Frame = +2
Query: 368 LRKQMVSVTNDILDHPCDDLDSKMTTMYQATYKKRSFPV-ADYRTI--MASSQSSAPIPV 538
+ K +V D D+ DD + T T PV A + SQ + P P
Sbjct: 184 ISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEKSQENKPKPT 243
Query: 539 ESNRLGLLRCYKDPTHFSENPPKVRPSIHPPAPIHTGVTPQSIKT 673
G + +H V+PS HP I T T S ++
Sbjct: 244 PFGSGGPSKPTPFESHGPAKQISVQPSEHPKPSISTTTTGSSYRS 288
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 239 APPAQRAPVAPYCHCDAHSYSPRVEQYK 322
AP A + Y H H Y PR+E+ K
Sbjct: 99 APEAHEKALTFYHHLKLHPYGPRMEEMK 126
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 482 VADYRTIMASSQSSAPI 532
VA+YRT++ S QS+AP+
Sbjct: 138 VAEYRTLLNSMQSNAPV 154
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 499 YHGLVAIISSDSCGVESSWPPSLLQRSYSFLREPS*SQAFDSSSGTDPHWSHAAVDK 669
Y+G + SC +++S P ++ SY L SQ SS HW +D+
Sbjct: 602 YYGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEF-SQQSHSSGLFSVHWFRVVLDE 657
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 197 PIVGKPCEPPTPSGAPPAQRAPVAP 271
P + P PP P PP AP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 257 APVAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVT 394
A + P C + S R QY + L++ +++C++ L K + T
Sbjct: 112 ANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSNLEKLVADHT 157
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 191 PKPIVGKPCEPPTPSG--APPAQRAPVAPYCHCDAHSYSP 304
P P VG+ PPT SG PP Q+ P P + SP
Sbjct: 927 PPPKVGETYHPPTASGTRVPPVQQ-PSHPNPYTPVAPQSP 965
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 578 PTHFSENPPKVRPSIHPPAPIHTGVTP 658
P S PPKV + HPP T V P
Sbjct: 921 PAIASPPPPKVGETYHPPTASGTRVPP 947
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 502 HGLVAIISSDSCGVESSWPPSLLQRSYSFLREPS*SQAFDSSSGTDPHWSHAAVD 666
+G+VA + DS V+ +PP L Q Y E + + DP + + +D
Sbjct: 172 NGIVAGVGLDSSEVD--FPPELFQEVYKLAAEKGIRRTGHAGEEGDPSYIRSGLD 224
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 709 HVLSPAGKLREPSLYRLRRDSSVDRC-RRMNRRPDFRR 599
+VLS KL EPSL +R D+C +R R + R
Sbjct: 11 NVLSAKRKLTEPSLIDSKRVFPCDQCAKRFTRHENLTR 48
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 413 PCDDLDSKMTTMYQATYKKRSFPVADYRTIMASSQ 517
P ++ DS+ T ATY K FPVA + IM + Q
Sbjct: 4 PTNNNDSE-TKPNPATYWKSRFPVARIKKIMQADQ 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,961
Number of Sequences: 5004
Number of extensions: 54754
Number of successful extensions: 251
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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