Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3g19
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    31   0.16 
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    28   1.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.1  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   2.5  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    27   3.4  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   7.8  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 130 IALPSKLEELKDVIRREIRKELKIKEGAEKLREVATDRRSLSDVANIVKKA 282
           I LPS LEE +D+    + KE+  +E A +++       +  DV N++KKA
Sbjct: 108 INLPSALEEFEDIDLLPLLKEVLKREVARRIK--LPHFNTFEDVVNLLKKA 156


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 46  YYHSDYIRHPVLHELGVKYGIKTECIPEIA 135
           Y+     RH  +H  G   G   ECIPE++
Sbjct: 338 YFRDLGYRHSDIHHCGQSLGCNCECIPELS 367


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 272 TILATSDRDLRSVATSRSFSAPSFILSSFRISLRMTSL-SSSNFDGNAISGIHSVLIPYL 96
           TI ++S       +TS + S+ S   SSF  +L  +S+ SSS+F  +  S   ++     
Sbjct: 289 TISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSS 348

Query: 95  TPSS 84
           +PSS
Sbjct: 349 SPSS 352


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -1

Query: 278 FLTILATSDRDLRSVATSRSFSAPSFILSSFRISLRMTSLSSSNFDG 138
           F  +L++ DRD  S    RS S     LSSF +S + TS S + F G
Sbjct: 62  FFKMLSSRDRDAHSTLRKRSNS-----LSSF-LSTKSTSASENKFHG 102


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 23  PQLWQTQVIIIVIIFDTQFFTNLVSS 100
           PQ W T+V+IIV+I    +F +L+ S
Sbjct: 43  PQHWITRVVIIVLIVLAWYFFSLLLS 68


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = +1

Query: 148 LEELKDVIRREIRKELKIKEGAEKL-REVATDRRSLSDVANIVKKANIK 291
           L+E  ++++R ++KE K+K   E+L  E  T++ +++  AN + K+ +K
Sbjct: 207 LDENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVN--ANSLGKSFVK 253


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 373 EDLSYDEEIILASEAAQQQRQLGEATTDRKLASLEKQLNIELKVKQG 513
           +DL+ D      SE  Q    L EAT D +LA+L  ++ IE  V  G
Sbjct: 379 DDLNKDMRFHKLSEVRQHVNTLKEATKDDELAALASRV-IEKIVDSG 424


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 246 SPICSYLTKFLGTFLYFKFFSYFSTYDIF 160
           S IC +L KF   + Y KFF++   Y +F
Sbjct: 337 SAICDWL-KF-SRYHYLKFFTFVEAYSVF 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.129    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,920
Number of Sequences: 5004
Number of extensions: 43285
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)