Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3g19
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 35 0.053
02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916 29 3.5
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 29 4.6
11_01_0772 - 6455042-6458107 28 6.0
04_04_1691 - 35393728-35394585 28 6.0
04_01_0290 + 3843610-3843712,3844088-3846003 28 6.0
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 28 8.0
07_01_1161 - 10991245-10991283,10991389-10991427,10991513-109917... 28 8.0
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 35.1 bits (77), Expect = 0.053
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Frame = +1
Query: 148 LEELKDVIRREIRKELKIKEGAEKLREVATDRRSLSDVANIVKKANIKLNELKSDXXXXX 327
++EL+ + RK K+K+G E L++V+TD+ ++ K K +LK
Sbjct: 295 IDELRGEAKMWQRKTRKLKQGLETLKKVSTDKSKQRSEQDLEKMWQRKTRKLKQGLETLK 354
Query: 328 XXXXXXRGQSTPTSPE-DLSYDEEIILASEAAQQQRQLGEATTDRKLA 468
Q + E +S E L E + +R L E T + ++
Sbjct: 355 KECADKSKQQSELELELSISISERDSLRQEIEELKRSLEEVTARQTIS 402
>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
Length = 722
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 136 LPSKLEELKDVIRREIRKELKIKEGAEKLREVATDRRSLSDVANIVKKANIKLNELK 306
L +++ LKD E+ E K+KE AEK R++ + L K A K+ EL+
Sbjct: 231 LNAEINRLKDSFNSEL--ESKVKESAEKTRKLEAETSVLRIKLKKAKVAEEKVAELE 285
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 135 CYFWNTLSLDSVLDTKFVKNWVSNIITMII 46
C F + + LD K +KNWV N+IT +I
Sbjct: 350 CTFAGQVIMQGFLDMK-MKNWVRNLITRVI 378
>11_01_0772 - 6455042-6458107
Length = 1021
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 79 LHELGVKYGIKTECIPEIALPSKLEELKDVIRREIRKELKIKEGAEKLREVATDRRSLSD 258
L+ L K C+P P++++EL I + + L+++ L+++ATD +
Sbjct: 394 LNGLATDIAEKCNCLPLANSPAQVQELVAYIVKNCQDLLQMENNPSGLQKLATDILKKCE 453
Query: 259 VANIVK 276
+ +VK
Sbjct: 454 LLPLVK 459
>04_04_1691 - 35393728-35394585
Length = 285
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 4 LTLHRASSIMADPGYYHSDYIRHPVLHELGVKYGIKTECIPEIALPSKLEELKD 165
L LHR + ++ PGYY Y+ P G G C P AL +LE+ +D
Sbjct: 173 LHLHRPAPLLHHPGYYDDQYLYPPPAAAAG---GGGLLCSP--ALDMELEDEED 221
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 28.3 bits (60), Expect = 6.0
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 8/183 (4%)
Frame = +1
Query: 151 EELKDVIRR--EIRKELKIKEGA-EKLRE---VATDRRSLSDVANIVKKANIKLNELKSD 312
+EL+DV R+ EI+ + + EG +KLR +A + S+S++ VK+ ++L L
Sbjct: 449 KELEDVKRKMEEIQVKKDLVEGEKDKLRLEILIAEQKHSMSELE--VKRLKMELGALAEA 506
Query: 313 XXXXXXXXXXXRGQSTPTSPEDLSYDEEIILASEAAQQQRQLGEATTDRKLASLEKQLNI 492
+ + + EEI ++ EAA++ + A DR A L K I
Sbjct: 507 NETAVKSFDAEKEKFIREMGDLKRKIEEIQVSKEAAEEVGRNKNAEADRLRAELVK---I 563
Query: 493 ELKVKQGAENMXXXXXXXXXXRDKKLLAEAHQMLADSKVKIEYLKLRISKLT--KQQKGD 666
++ + Q + D+K A + L KV+ LK + +L K +K +
Sbjct: 564 QVSLSQLQASYNELDAKHSLLNDEK--NSAQKALDVEKVEAYKLKSKFEELENYKAEKDE 621
Query: 667 TAG 675
AG
Sbjct: 622 EAG 624
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 409 SEAAQQQRQLGEATTDRKLASLEKQLNIELKVKQGAE 519
S A +QR L E D LASL+ ELK Q AE
Sbjct: 382 SPALTEQRLLREQQDDEYLASLQADQEKELKALQEAE 418
>07_01_1161 -
10991245-10991283,10991389-10991427,10991513-10991738,
10991902-10992054,10992133-10992638,10992651-10993019,
10993107-10993553,10993752-10994339
Length = 788
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 85 ELGVKYGIKTECIPEIALPSKLEELKDVIRREIRKELKIKE----GAEKLREVATDRRS 249
E ++ I+ E E KLE ++ IR+EIR+E +I + A K E T++RS
Sbjct: 267 EAKIRESIRAELTSEF--DKKLESMRAKIRQEIREEQQIPQAAAAAAHKELESPTEKRS 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.129 0.341
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,537
Number of Sequences: 37544
Number of extensions: 241142
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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