Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3g19
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    28   0.24 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.2  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     24   5.2  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.0  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 358 TPTSPEDLSYDEEIILASEAAQQQRQLGEATTDRKLASLEKQ 483
           TP SPE L   ++    S   QQQ+Q  ++   ++L+  ++Q
Sbjct: 221 TPPSPEQLQNHQQTAQQSSQQQQQQQQQQSLQQQQLSQQQQQ 262


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 326 NRSSYYLVDNQHQHHQKICLMTKK 397
           + SSYY +DN+  H +++  + K+
Sbjct: 180 DNSSYYTIDNKRVHFKEVSKLLKQ 203


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +1

Query: 346 RGQSTPTSPEDLSYDEEIILASEAAQQQRQLGEATTDRKLASLEKQLNIELKVKQ 510
           R Q          YDEE+ L  E+  + +   EA +  + A  +  +  E++  Q
Sbjct: 677 RSQRATAGVPPARYDEEVYLVKESVAEPKTYKEAVSGPQSAEWKTAMAEEMQSHQ 731


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 564  FVSRLVAVANALYHIFST 511
            + S L A+  ALYH F+T
Sbjct: 2386 YASHLPAIIGALYHKFAT 2403


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 564  FVSRLVAVANALYHIFST 511
            + S L A+  ALYH F+T
Sbjct: 2387 YASHLPAIIGALYHKFAT 2404


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.311    0.129    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,917
Number of Sequences: 2352
Number of extensions: 10769
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)