Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3g19
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.6  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   2.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.3  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
          protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 87 FVKNWVSNIITMIITW 40
          FV  +V NIIT I+ W
Sbjct: 44 FVTGFVGNIITCIVIW 59


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 389 TKKLF*HLKQHNNKDSLEKQLQIANLH 469
           TKKLF   K   N+D  EK  Q+   +
Sbjct: 92  TKKLFNKCKSIQNEDPCEKAYQLVKCY 118


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 352 QSTPTSPEDLSYDEEIILASEAAQQQRQLGEATTDRKL 465
           ++TP  P+  S D+  I  SE     R     +TD K+
Sbjct: 250 RATPPQPDRTSKDQGTIGESEVFDTTRYPHGCSTDEKV 287


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 335 SYYLVDNQHQHHQ 373
           S YL   Q QHHQ
Sbjct: 96  SLYLQQQQQQHHQ 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.129    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,962
Number of Sequences: 438
Number of extensions: 2969
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)