Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3g18
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    55   9e-09
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    46   7e-06
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.29 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   1.6  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    27   2.1  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.3  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   8.3  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 25/66 (37%), Positives = 41/66 (62%)
 Frame = +1

Query: 238 SDNSRQIRVFLKP*KVFDTEKRGFLEIDELKTIVTSYAEPFSEEETREMLRDANVRGDGN 417
           +DN  ++R   K   VFD +  G++ ++EL  ++TS  E  S+EE  +M+R+A+  GDG 
Sbjct: 81  TDNEEEVREAFK---VFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGV 137

Query: 418 VFYESF 435
           + YE F
Sbjct: 138 INYEEF 143


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%)
 Frame = +1

Query: 265 FLKP*KVFDTEKRGFLEIDELKTIVTSYAEPFSEEETREMLRDANVRGDGNVFYESFVES 444
           F+K  +VFD +  G + + EL+ ++TS  E  S EE  E+L+   V+ DG V Y  FV+ 
Sbjct: 79  FVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQM 137

Query: 445 LFS 453
           + +
Sbjct: 138 ILA 140


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 280 KVFDTEKRGFLEIDELKTIVTSYAEPFSEEETREMLRDANVRGDGNVFYESFV 438
           K+FD++K   ++  EL+  + +      + E  ++LRD +  G G +  E FV
Sbjct: 44  KLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFV 96


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 74  INSNYFFDTMAVLDAYNPLQNVSLRFNEDQLKEIGEWFENNAKPQLT---STDGDPIRAI 244
           I +NY F     L     L+     F +   ++ GE+F+N  K +LT    +D + +R +
Sbjct: 461 ILNNYIFSCPLFLVTPEELEEQYTDFFKKLKEKYGEFFQNLLKKELTGKPESDLEGLRLV 520

Query: 245 TVDKFVSFLNLK 280
            V    ++ NLK
Sbjct: 521 GVQLQATYENLK 532


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 313 EIDELKTIVTSYAEPFSEEETREMLRDANVRGDGNVFYESFVESLFSVAPELYE 474
           ++DE    +  Y E +      E   D   R DG   Y+S V S + +A +LYE
Sbjct: 37  DVDEQSRKLQEYFEFWDRNHENESEEDRARRIDG---YKSVVNSYYDLATDLYE 87


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 441 FNKTFIKYISIATDICIT*HFTCLLF 364
           F  TF+    IA   CIT  F CL+F
Sbjct: 52  FLHTFLADCEIAKSTCITSVFNCLIF 77


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +2

Query: 122 NPLQNVSLRFNEDQLKEIGEWFENNAKPQLTSTDGDPIRAITVD 253
           N  +N+S+   +D+++E+G+         +  +   P+   T+D
Sbjct: 147 NVSENISVNTEDDKVEEVGQKLNYTKITSIDQSQETPVHLSTID 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,905
Number of Sequences: 5004
Number of extensions: 43946
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)