Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3g12
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...   120   8e-28
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    34   0.11 
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    34   0.11 
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    29   2.5  
AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF005206-1|AAB61749.1|  105|Caenorhabditis elegans DAF-3 protein.      29   2.5  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical p...    29   4.3  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    28   5.7  
AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U42438-4|AAM75371.1|  617|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score =  120 bits (290), Expect = 8e-28
 Identities = 59/165 (35%), Positives = 103/165 (62%), Gaps = 8/165 (4%)
 Frame = +3

Query: 216 DFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGG 395
           D    + +P  T T+VI +++  G V+  D + SYG +AR+++  R  KVND +L+  GG
Sbjct: 5   DEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGG 64

Query: 396 DYADFQYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI 575
           D+ADF +L+++I+++++  +       + P++LH +LT +LY KR KM+P+WN+ VVAG+
Sbjct: 65  DHADFHWLQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGV 122

Query: 576 QDGE--------PFLGAVDKLGTAYEDAVISNGLGAYMATPLLRD 686
           ++ E        PF+G + + G AY+   I+ GLGA++    + D
Sbjct: 123 EEEEKNNKETSTPFIGVITQKGCAYQVKHIATGLGAFLLNQAVED 167


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
 Frame = +3

Query: 249 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 425
           +T  + G  F    ++A DT  +   +    RD  ++  +ND I+L   G Y D   LK 
Sbjct: 53  STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109

Query: 426 IIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 602
           ++Q ++   R       +        L+R LY +R    P +   ++AGI + G+  + +
Sbjct: 110 VLQSRLHKYR-FDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166

Query: 603 VDKLGTAYEDAVISNGLGAYMATPLL 680
            D +G        ++G    M  P L
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFL 192


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
 Frame = +3

Query: 249 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 425
           +T  + G  F    ++A DT  +   +    RD  ++  +ND I+L   G Y D   LK 
Sbjct: 53  STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109

Query: 426 IIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 602
           ++Q ++   R       +        L+R LY +R    P +   ++AGI + G+  + +
Sbjct: 110 VLQSRLHKYR-FDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166

Query: 603 VDKLGTAYEDAVISNGLGAYMATPLL 680
            D +G        ++G    M  P L
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFL 192


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = +3

Query: 180 ASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVM 359
           AST +P     Q   A  A  +    T+I ++   G V+  D L S   L      PR+ 
Sbjct: 12  ASTFSPDGRIFQVEYAQKA--VDNAGTMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMF 68

Query: 360 KVNDLILLGCGGDYADFQYLKD 425
            VND + +   G+Y D   LK+
Sbjct: 69  NVNDNVGVAVAGNYPDGFALKN 90


>Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical
           protein C06C3.3 protein.
          Length = 576

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 139 TDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAP 243
           T ++ +H+I+FL+ L  LL   T  R L  TQ  P
Sbjct: 37  TRKQFKHWIVFLDALTDLLRTATAVRRLFTTQGIP 71


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 590 GFTILNTGNHIAVPEGIHLAPLVVEDTSQPAVQRTGLELE 471
           GF +LN GN   VP+  H   +   +T+   +QR+G+++E
Sbjct: 60  GFNLLNVGNMANVPDE-HTPMMSPVNTTTKILQRSGIKME 98


>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
           protein Y15E3A.4 protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 590 GFTILNTGNHIAVPEGIHLAPLVVEDTSQPAVQ 492
           GF + +TG  +AVP  +HLA  ++   +   +Q
Sbjct: 283 GFAVNHTGYFVAVPRALHLAFKIISGVASDRIQ 315


>AF005206-1|AAB61749.1|  105|Caenorhabditis elegans DAF-3 protein.
          Length = 105

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 590 GFTILNTGNHIAVPEGIHLAPLVVEDTSQPAVQRTGLELE 471
           GF +LN GN   VP+  H   +   +T+   +QR+G+++E
Sbjct: 60  GFNLLNVGNMANVPDE-HTPMMSPVNTTTKILQRSGIKME 98


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -1

Query: 639 SQHLHRLFPIYQQLRERVHHPEYRQPHSCSRGDPSCSSCCRGHESTSSAENGA*AGDHLQ 460
           + H H   P + ++    HH + +   S S    S SS      S+SS+ +     +   
Sbjct: 82  THHAHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHH 141

Query: 459 HSAH 448
           H  H
Sbjct: 142 HKKH 145


>Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical
           protein T26H2.7 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 690 LRPSVEESPCKLLARSRSQHLHRLFPIY 607
           L+ S +ESPC L+    S+ L R+ P+Y
Sbjct: 54  LQRSDQESPCSLVTLFYSKRLKRILPLY 81


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 SIQARCTGFYSSLSEPHHDHHNCH 265
           S +   T   SS+S P H HH CH
Sbjct: 344 STERTATTATSSVSTPKHPHHGCH 367


>AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.6 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 567 QPHSCSRGDPSCSSCCRGHESTSSAENGA 481
           Q   CS  +P+C S C GH        GA
Sbjct: 115 QCRECSEKNPNCGSSCEGHWCHEDMSTGA 143


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 105 GDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAH 230
           G+   PTP  +       F+  P +A    P  H  +DFT+H
Sbjct: 438 GERSTPTPQEEEEEMMRNFFPRPVSAQAYQPPGHQPEDFTSH 479


>U42438-4|AAM75371.1|  617|Caenorhabditis elegans Hypothetical
           protein C09G4.2c protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 506 QPAVQRTGLELETISNTALINDFLLN-DILQILKIS 402
           +P + ++    ETI N   +N FL N D  QI KIS
Sbjct: 50  RPIIGKSDAAFETIGNALRLNSFLRNLDATQIEKIS 85


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 141  GPSPGAFYNFPGNASTIAPSRHG 209
            GPSPG   N P N S + PS  G
Sbjct: 1396 GPSPGPSPNEPSNPSILGPSTGG 1418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,764,595
Number of Sequences: 27780
Number of extensions: 369739
Number of successful extensions: 1192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)