Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3g08
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL157766-3|CAI13923.2|  728|Homo sapiens spastic ataxia of Charl...    32   1.7  
U20657-1|AAB72237.1|  963|Homo sapiens ubiquitin protease protein.     30   9.1  
BC125131-1|AAI25132.1|  963|Homo sapiens ubiquitin specific pept...    30   9.1  
BC125130-1|AAI25131.1|  963|Homo sapiens ubiquitin specific pept...    30   9.1  
AK223292-1|BAD97012.1|  963|Homo sapiens ubiquitin specific prot...    30   9.1  
AK222725-1|BAD96445.1|  916|Homo sapiens ubiquitin specific prot...    30   9.1  
AF017306-1|AAC27356.1|  916|Homo sapiens UnpES protein.                30   9.1  
AF017305-1|AAC27355.1|  963|Homo sapiens UnpEL protein.                30   9.1  

>AL157766-3|CAI13923.2|  728|Homo sapiens spastic ataxia of
           Charlevoix-Saguenay (sacsin) protein.
          Length = 728

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 533 WVPYGDCKYRNCHMFPRFSRKSLKG 459
           W+  GD   +NCH+F     K LKG
Sbjct: 61  WIKIGDLTSKNCHLFVNLQSKGLKG 85


>U20657-1|AAB72237.1|  963|Homo sapiens ubiquitin protease protein.
          Length = 963

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 H*KVRLILTKIDVCNSATPTNTIECQF 389
           H KV + L ++ +C ++ PTN + C F
Sbjct: 130 HCKVEVYLLELKLCENSDPTNVLSCHF 156


>BC125131-1|AAI25132.1|  963|Homo sapiens ubiquitin specific
           peptidase 4 (proto-oncogene) protein.
          Length = 963

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 H*KVRLILTKIDVCNSATPTNTIECQF 389
           H KV + L ++ +C ++ PTN + C F
Sbjct: 130 HCKVEVYLLELKLCENSDPTNVLSCHF 156


>BC125130-1|AAI25131.1|  963|Homo sapiens ubiquitin specific
           peptidase 4 (proto-oncogene) protein.
          Length = 963

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 H*KVRLILTKIDVCNSATPTNTIECQF 389
           H KV + L ++ +C ++ PTN + C F
Sbjct: 130 HCKVEVYLLELKLCENSDPTNVLSCHF 156


>AK223292-1|BAD97012.1|  963|Homo sapiens ubiquitin specific
           protease, proto-oncogene isoform a variant protein.
          Length = 963

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 H*KVRLILTKIDVCNSATPTNTIECQF 389
           H KV + L ++ +C ++ PTN + C F
Sbjct: 130 HCKVEVYLLELKLCENSDPTNVLSCHF 156


>AK222725-1|BAD96445.1|  916|Homo sapiens ubiquitin specific
           protease, proto-oncogene isoform b variant protein.
          Length = 916

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 H*KVRLILTKIDVCNSATPTNTIECQF 389
           H KV + L ++ +C ++ PTN + C F
Sbjct: 130 HCKVEVYLLELKLCENSDPTNVLSCHF 156


>AF017306-1|AAC27356.1|  916|Homo sapiens UnpES protein.
          Length = 916

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 H*KVRLILTKIDVCNSATPTNTIECQF 389
           H KV + L ++ +C ++ PTN + C F
Sbjct: 130 HCKVEVYLLELKLCENSDPTNVLSCHF 156


>AF017305-1|AAC27355.1|  963|Homo sapiens UnpEL protein.
          Length = 963

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 H*KVRLILTKIDVCNSATPTNTIECQF 389
           H KV + L ++ +C ++ PTN + C F
Sbjct: 130 HCKVEVYLLELKLCENSDPTNVLSCHF 156


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,855,430
Number of Sequences: 237096
Number of extensions: 1685374
Number of successful extensions: 2002
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)