Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3g07
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0069 + 40869496-40869535,40869627-40869663,40870241-408703...    27   3.6  

>01_07_0069 +
           40869496-40869535,40869627-40869663,40870241-40870387,
           40872360-40872405,40872580-40872846,40873151-40873540
          Length = 308

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 144 ISSFRFFYALSVLIFYLSIPKIIRNLVNYIFLKT 43
           ISS     + S+LIF  S+ K++  ++N I  KT
Sbjct: 51  ISSIELSKSSSILIFISSMDKMLTRIINLILRKT 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,000,164
Number of Sequences: 37544
Number of extensions: 84722
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)