Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3g03
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    28   0.10 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    26   0.31 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.7  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 15/71 (21%), Positives = 35/71 (49%)
 Frame = +1

Query: 73  KNSRMNTNLIIKVIKTNGDVCPDLLYNNPLLDKTVTRALSKSFVHILNGSRDNSNFNKNL 252
           + S  N N   K  +T+ +   D        ++ +  +LS +++  ++   +N+N+NK L
Sbjct: 285 QKSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNNYNKKL 344

Query: 253 RHSLLTYIRNV 285
            ++ + YI  +
Sbjct: 345 YYN-INYIEQI 354


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 9/40 (22%), Positives = 25/40 (62%)
 Frame = +1

Query: 166 DKTVTRALSKSFVHILNGSRDNSNFNKNLRHSLLTYIRNV 285
           ++ +  +LS +++  ++   +N+N+NK L ++ + YI  +
Sbjct: 78  ERKIISSLSNNYISNISNYNNNNNYNKKLYYN-INYIEQI 116


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 549 LNSYR*DSSVIYSHK*ILFLYYVHSSSSELGSLPYQHYHSRKLNLYP 409
           L  YR     +YSHK +L  YY+   S++   LPY      +   YP
Sbjct: 251 LPDYR-GEEYLYSHKLLLNRYYLERLSND---LPYLEEFDWQKPFYP 293


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 549 LNSYR*DSSVIYSHK*ILFLYYVHSSSSELGSL 451
           L  YR     +YSHK +L  YY+   S++L  L
Sbjct: 251 LPDYR-GEEYLYSHKLLLNRYYLERLSNDLPHL 282


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 577 SSFHNLFRTFKFLSVRFQCN 518
           S FH L +T  F+ V   CN
Sbjct: 24  SVFHQLLQTEAFVDVTLACN 43


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 196 SWKVLSSLFYP 164
           SW++ ++LFYP
Sbjct: 218 SWRITNNLFYP 228


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 229 NSNFNKNLRHSLLTYIRNVCQV 294
           N+N+N N +     YI N+ Q+
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQI 127


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 229 NSNFNKNLRHSLLTYIRNVCQV 294
           N+N+N N +     YI N+ Q+
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQI 127


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 298 PKEHIKTDENVMNLVNDV 351
           PKE +K D    N+V D+
Sbjct: 298 PKEQVKEDSLYTNIVVDI 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,299
Number of Sequences: 438
Number of extensions: 3909
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)