Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f23
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    32   0.094
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.66 
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    28   1.2  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    27   2.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    26   6.2  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   8.2  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 31.9 bits (69), Expect = 0.094
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 330 HYLK*HQVWDHQFLHAIFLHHQVFLSPSKLYVIKLVYLHYIPLPFL 193
           HYL  +   +  F H+  L ++ F +P +L+ + ++  H +P P L
Sbjct: 604 HYLVQNVHLNKDFRHSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 294 FLHAIFLHHQVFLSPSKLYVIKLVYLHYIPLPFL 193
           F++   L+HQ+ LS S  ++  L+  H++   FL
Sbjct: 154 FINFFLLYHQIILSHSLFHISHLISFHFLFFSFL 187


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 393 NLEWRI--RNLPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNLNIEQANIQ 566
           N EW+   + + Y      IS N+     +IRT  K YF K    EL +    + + N+Q
Sbjct: 130 NDEWKAWQKRMRYKKNLTKISKNHHS---IIRTPKKSYFPKDHAKELLKCIRQMCKLNVQ 186

Query: 567 SSHHFNTLII 596
           +      LII
Sbjct: 187 AGFTIEELII 196


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 535 SLSSSGILNFLKYFLFVVLITMHLSSLFALIEYVSI 428
           SLS  G+L   + +  +  +T+HLS L  +  +VS+
Sbjct: 41  SLSWIGLLQKRQLYEIITYVTLHLSMLHIVFNFVSL 76


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 330 DCAEITECKDQPQVFRRNTRINLEWRIRNLPYPIETYSISANNDERCIVIRTTNKKYFKK 509
           D + I      P+V+ ++    L+    +LP PI +Y+IS  +D   + I   ++ +F  
Sbjct: 372 DISNIRSNNISPKVYAKDFN-GLQAAKVDLPGPINSYTIS--SDRSVVAILVNSQIFFYS 428

Query: 510 FKIPELERLN 539
           F +  L   N
Sbjct: 429 FPVSNLFSTN 438


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +3

Query: 291 EIGDPIPDAISNSDCAEITECKDQPQVFRRNTRINLEWRIRNLPYP 428
           E GD IP  I N  C E   C +      RN      W    +P P
Sbjct: 312 EDGDWIPSEIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPPMIPNP 357


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 255 SPSKLYVIKLVYLHYIPLPFLYRLRTYNEFF*LFL 151
           SPS   + K+V+L  + L F+     Y+ F  +FL
Sbjct: 135 SPSSFLLGKIVFLILVDLNFIISQSCYDSFLPIFL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,711
Number of Sequences: 5004
Number of extensions: 60800
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)