Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f23
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    35   0.051
Z78198-8|CAB01574.2|  333|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ...    29   4.4  
AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine re...    28   7.7  
AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
           protein Y51A2D.15 protein.
          Length = 1222

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
 Frame = +3

Query: 237 RRAWKVKGKLGGEGKWHVEI-GDPIPDAISNSDCAEIT-ECKDQPQVFRRNTRINLEWR- 407
           RR  K   ++GG G    ++  D +  + ++S   EI  + +DQ  +  R+T    E R 
Sbjct: 164 RRKMKETDEVGGGGGSIEDVDSDDMESSTTSSSNGEIAIKQQDQSFLMSRSTSPTSELRH 223

Query: 408 ----IRNLPYPIETYSISANN-DERCIVIRTTNKKYFKKFKIPELERLNL 542
               I NL + +      A N DE C  +   N++  +K KI E ERL L
Sbjct: 224 QTLQIANLQHEMRQMRTQAENRDEECQKLELDNEEKAQKIKILENERLKL 273


>Z78198-8|CAB01574.2|  333|Caenorhabditis elegans Hypothetical
           protein F55C5.9 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -3

Query: 604 WYIIINVLK**EDCILACSIFKFS---LSSSGIL---NFLKYFLFVVLITMHLSSLFALI 443
           W+ IINVL     C L   +       L ++GIL    F   FLF VL    + + F++I
Sbjct: 53  WHTIINVLTEFHSCFLMLPVVHLPYPLLRATGILAEFGFSGLFLFYVLSAFIIQTSFSII 112

Query: 442 EYVSIGY 422
           E     Y
Sbjct: 113 EMFYFRY 119


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 267  GGEGKWHVEI-GDPIPDAISNSDCAEITECKD 359
            G + KW V + GDP+P  I   D  EI +C++
Sbjct: 2421 GSQLKWTVRVTGDPMPKVIWMRDGFEIPDCEE 2452


>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform b protein.
          Length = 1144

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/92 (25%), Positives = 41/92 (44%)
 Frame = +3

Query: 147  KEEKVKKIHYKFEDGREMVEEYNVDTQVLLRRAWKVKGKLGGEGKWHVEIGDPIPDAISN 326
            K +++ +I  K  +  E  E   ++ +    R  ++ GK    G     + D I  ++  
Sbjct: 942  KSDELAEIERKRRESEEK-ERLEIEAKKEAERQREIDGKYDVGGCSFAYLRDTINTSM-- 998

Query: 327  SDCAEITECKDQPQVFRRNTRINLEWRIRNLP 422
             D   +  C+++   FRR  RI  EW+ RN P
Sbjct: 999  -DINLLKACEEE---FRRRLRIYNEWKSRNAP 1026


>AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein13 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 526 SSGILNFLKYFLFVVLITMHLSSLFALI---EYVSIGYGRFLILHSKFILV 383
           SS ILN LK  + + + T  ++ +FA++   +  ++ + + L  H+ F +V
Sbjct: 199 SSKILNRLKVLVVIYIFTWFVNQIFAILFLHDNGTVKWEKMLFTHNAFFIV 249


>AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical
           protein Y108F1.3 protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 330 DCAEITECKDQPQVFRRNTRINLEWRIRNLPYPIETY 440
           D +E+T    +P +   N  +NL  RIRN P  ++TY
Sbjct: 162 DNSELTRINVEPNIITLNAHLNLLKRIRNDP-ELKTY 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,821
Number of Sequences: 27780
Number of extensions: 331354
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)