Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f23
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.8  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 569 FSSFQHINNYVPRNLNNYS 625
           +S++ + NNY   N NNY+
Sbjct: 324 YSNYNNYNNYNNNNYNNYN 342


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +3

Query: 93  YKNTIWYHTLLDAEKSCLKEEKVKKIHYKFEDGREMVEEYNVDTQVLLRRAWKVKGK 263
           YK     +  L  EK  L EE+  +  Y     RE     N ++    R  WK + +
Sbjct: 12  YKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSR 68


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +3

Query: 93  YKNTIWYHTLLDAEKSCLKEEKVKKIHYKFEDGREMVEEYNVDTQVLLRRAWKVKGK 263
           YK     +  L  EK  L EE+  +  Y     RE     N ++    R  WK + +
Sbjct: 12  YKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSR 68


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +3

Query: 93  YKNTIWYHTLLDAEKSCLKEEKVKKIHYKFEDGREMVEEYNVDTQVLLRRAWKVKGK 263
           YK     +  L  EK  L EE+  +  Y     RE     N ++    R  WK + +
Sbjct: 12  YKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSR 68


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +3

Query: 93  YKNTIWYHTLLDAEKSCLKEEKVKKIHYKFEDGREMVEEYNVDTQVLLRRAWKVKGK 263
           YK     +  L  EK  L EE+  +  Y     RE     N ++    R  WK + +
Sbjct: 12  YKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWKERSR 68


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 357 LCIQLFQHNHYLK*HQVWDH-QFLHAIFLHHQVF 259
           +C + F +NH LK HQV  + + ++   L H+ F
Sbjct: 236 ICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETF 269


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 578 FQHINNYVPRNLNNYST 628
           FQ+ NN +P  L +YST
Sbjct: 397 FQNKNNLIPSALQSYST 413


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 578 FQHINNYVPRNLNNYST 628
           FQ+ NN +P  L +YST
Sbjct: 397 FQNKNNLIPSALQSYST 413


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 539 VQPLKFRYFKLFKVFFVCCSNNYAPFIIVCTNRICFNWVW 420
           V PL      L++ FF C +     F  +  N IC    W
Sbjct: 298 VPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPW 337


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 247 QALRNKTCVSTLYSSTISLPSSNL 176
           +ALRN     T  S+T  +PS+ L
Sbjct: 421 EALRNHDMSLTKASATFGIPSTTL 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,455
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)