Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f20
         (285 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B48A6 Cluster: PREDICTED: similar to ORF2-encod...    31   3.7  
UniRef50_UPI0000D8C44C Cluster: UPI0000D8C44C related cluster; n...    31   3.7  
UniRef50_A3D2V4 Cluster: 3-beta hydroxysteroid dehydrogenase/iso...    31   4.9  
UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria gla...    31   6.5  

>UniRef50_UPI00015B48A6 Cluster: PREDICTED: similar to ORF2-encoded
           protein; n=5; Nasonia vitripennis|Rep: PREDICTED:
           similar to ORF2-encoded protein - Nasonia vitripennis
          Length = 1146

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 131 SLPELQLVLNRLSDSTPGCDGIPYSFLINSKPITLSYLLNL 9
           S+ ++ L ++  S    G DGIP   ++ + PI   ++LNL
Sbjct: 801 SMSDVVLAISHFSSQARGVDGIPCGVVVKALPIIGEFILNL 841


>UniRef50_UPI0000D8C44C Cluster: UPI0000D8C44C related cluster; n=5;
           Danio rerio|Rep: UPI0000D8C44C UniRef100 entry - Danio
           rerio
          Length = 1084

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -2

Query: 128 LPELQLVLNRLSDSTPGCDGIPYSFLINSKPITLSYLLN 12
           + EL+ V+NR+ +S+PG D + Y+ + +     LS +L+
Sbjct: 685 MAELKRVINRVKESSPGLDKVSYTMIKHLSDKALSIMLD 723


>UniRef50_A3D2V4 Cluster: 3-beta hydroxysteroid
           dehydrogenase/isomerase; n=4; Shewanella baltica|Rep:
           3-beta hydroxysteroid dehydrogenase/isomerase -
           Shewanella baltica OS155
          Length = 402

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 98  LSDSTPGCDGIPYSFLINSKPITLSYLLNLI 6
           L  + P C G  Y FL N +PIT++ +LNLI
Sbjct: 291 LCQAKPKCQGKAY-FLSNDEPITMAKMLNLI 320


>UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria
           glabrata|Rep: Pol-like protein - Biomphalaria glabrata
           (Bloodfluke planorb)
          Length = 1222

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 134 FSLPELQLVLNRLSDSTPGCDGIPYSFLINSKPITLSYLLNL 9
           FSL EL+  L++  D+ PG D I Y FL +    +L+ LL +
Sbjct: 427 FSLEELRESLDKSHDTAPGEDEIHYQFLKHLPEPSLAVLLGV 468


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,182,035
Number of Sequences: 1657284
Number of extensions: 4190445
Number of successful extensions: 8092
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8091
length of database: 575,637,011
effective HSP length: 72
effective length of database: 456,312,563
effective search space used: 10038876386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)