Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f20
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   1.2  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   2.8  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    24   3.7  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    24   3.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    23   8.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    23   8.5  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    23   8.5  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    23   8.5  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 180 PSFRLIRHPP*FSVFIFFAGTSISIEPV 97
           PSFR     P  S   F +G+SI IEPV
Sbjct: 249 PSFRSANASPFDSCDSFHSGSSIPIEPV 276


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 161  AILPNLACSFSLPELQLVLNRLSDSTPGCDGIPYSFLINSKPITLSYLLNL 9
            A LP    S+ LP+       +  +   C  I Y F     P T +Y LN+
Sbjct: 1065 AALPEWTSSYYLPDYPPDATAMESTRCNCKAIVYQFFFR-VPYTDTYELNV 1114


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 158 ILPNLACSFSLPELQLVLNRLSDSTPGCDGIPYSFLINSK 39
           ++  LA  FSL  L L ++ +SDS P  D +    ++  K
Sbjct: 25  VVKALALIFSLLILYLTISNVSDSPPKRDSLSLDDIVLQK 64


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 83  EWSLITGSILIEVPAKKMNT 142
           +W +I+  I + VP KK+NT
Sbjct: 229 DWPIISKHISLIVPTKKVNT 248


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 147 IREDGESGESLEQNLFH 197
           IREDG    +L QN FH
Sbjct: 399 IREDGSVISALAQNSFH 415


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 91  SDNRFNTN*SSGKENEH 141
           S N+ N+N + GKEN H
Sbjct: 106 SCNKINSNSNKGKENMH 122


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  KSKEYHHILEWSLITGSILIEVPAKKMNTLN 148
           K  E H  + WS  +   + ++P + +N LN
Sbjct: 120 KPSEIHPHMSWSSKSEGKMFKIPEELLNKLN 150


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 197 MEKILFQAFA*FAILPNLACSFSLPELQLVLNRLSDS 87
           + + LF++   ++ L     S   P+ +LVL +L+DS
Sbjct: 342 LNEALFESMLGYSDLLTKDISLIFPDFKLVLQQLADS 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,348
Number of Sequences: 5004
Number of extensions: 19186
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)