Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3f20
(285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 29 0.76
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621... 27 3.1
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649... 26 4.1
07_03_0095 + 13346588-13346802,13346844-13346994,13348631-133488... 26 5.4
07_03_0655 - 20312389-20312560,20312785-20312936,20313049-203132... 25 7.1
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 25 9.4
11_04_0443 - 17808897-17809110,17809169-17813652 25 9.4
08_01_0050 + 350768-351214,352597-352717,352944-353118,353225-35... 25 9.4
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313... 25 9.4
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 56 KSKEYHHILEWSLITGSILIEVPAKKMNTLN*GGWRI 166
K + H LEW + G I + P + +N GGW +
Sbjct: 469 KHVQNHWSLEWMIKNGYISLNQPKLPIRAVNLGGWLV 505
>11_01_0737 +
6211149-6211466,6212022-6212183,6212290-6213101,
6213188-6213395,6214157-6214364,6214752-6215206,
6215585-6216011,6216391-6216471,6216571-6216761,
6216855-6216998
Length = 1001
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 79 PGVESDNRFNTN*SSGKENEHAKLGRMANQAKAWNKIFSIPL 204
PG + N F T+ +G N +LG ++ ++K +I S +
Sbjct: 382 PGPSAHNSFRTDARNGDFNHGPRLGGLSKESKEIKEIISFSI 423
>05_04_0413 -
21063868-21064344,21064416-21064482,21064865-21064948,
21065028-21065158,21065504-21065560,21065818-21065866,
21067357-21067442,21067715-21067792,21067952-21068074,
21068705-21068794,21068796-21068849,21068923-21069020,
21069093-21069160,21069688-21069777,21069870-21070117
Length = 599
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 131 SLPELQLVLNRLSDSTPGCDGIPYSFLINSKPITLSYLLNLI 6
S P + ++ SDST G+P ++N ++++Y+ +L+
Sbjct: 151 STPLVVVIPGLTSDSTAAVFGLPSLIVLNKMQLSVAYVKHLV 192
>07_03_0095 +
13346588-13346802,13346844-13346994,13348631-13348873,
13348942-13348986
Length = 217
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -1
Query: 162 RHPP*FSVFIFFAGTSISIEPVIRLHSRM*WY 67
+H P + + GT ++P I + R+ WY
Sbjct: 174 QHRPPMQIVMLIVGTRGDVQPFIAIGKRLQWY 205
>07_03_0655 -
20312389-20312560,20312785-20312936,20313049-20313207,
20313282-20313531,20313627-20313743,20313842-20313907,
20314008-20314183
Length = 363
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 86 WSLITGSILIEVPAKKMNT 142
W++ G +L+E P+K MNT
Sbjct: 199 WTVKQGPLLLEYPSKLMNT 217
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 37 GFELIKKE*GIPSHPGVESDNRFNTN 114
G +L+ G+P PG+ D+ FN N
Sbjct: 125 GMDLVIIPAGVPRKPGMTRDDLFNIN 150
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 77 ILEWSLITGSILIEVPAKKMNTLN*GGWRI 166
+LEW S +E+PAK M+ + G W +
Sbjct: 661 LLEWLRNLKSRGVELPAKFMDCIRRGSWLV 690
>08_01_0050 +
350768-351214,352597-352717,352944-353118,353225-353295,
353575-354209
Length = 482
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 137 SFSLPELQLVLNRLSDSTPGCDGIPY 60
S P +++ R+S +TP C G+ +
Sbjct: 303 SVGKPSSNIIIQRVSGTTPTCSGVGF 328
>01_01_0417 -
3135502-3135672,3135759-3135947,3136037-3136154,
3136398-3137048,3137146-3137309,3138598-3139098
Length = 597
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -2
Query: 200 GMEKILFQAFA*FAILPNLACSFSLPELQLVLNRLSDSTPGCDGIPYSFLINSKPITLSY 21
G +IL L C ++ Q V+N L D+ D + + SKP+ +S
Sbjct: 139 GSNRILHHTIGLPDFTQELRCFQTVTCYQAVVNNLEDAHEQIDAAISTAIKESKPVYISI 198
Query: 20 LLNL 9
NL
Sbjct: 199 SCNL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,557,562
Number of Sequences: 37544
Number of extensions: 106720
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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