Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f20
         (285 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      27   3.7  
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    27   3.7  
BT024215-1|ABC86277.1|  887|Drosophila melanogaster RE23733p pro...    26   8.6  
AY122192-1|AAM52704.1|  386|Drosophila melanogaster LD44515p pro...    26   8.6  
AE014296-1767|AAN11938.2|  887|Drosophila melanogaster CG6718-PD...    26   8.6  
AE014296-1766|AAN11937.2|  887|Drosophila melanogaster CG6718-PC...    26   8.6  
AE014296-1765|AAN11936.2|  887|Drosophila melanogaster CG6718-PB...    26   8.6  
AE014296-1764|AAF50194.3|  877|Drosophila melanogaster CG6718-PA...    26   8.6  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 140 CSFSLPELQLVLNRL-SDSTPGCDGIPYSFLINSKPITLSYLLNL 9
           C  + PE+  ++  L +  +PG DGIP   L N     +++++N+
Sbjct: 459 CRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINHIVNI 503


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 140 CSFSLPELQLVLNRL-SDSTPGCDGIPYSFLINSKPITLSYLLNL 9
           C  + PE+  ++  L +  +PG DGIP   L N     +++++N+
Sbjct: 407 CRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINHIVNI 451


>BT024215-1|ABC86277.1|  887|Drosophila melanogaster RE23733p
           protein.
          Length = 887

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 151 GRMANQAKAWNKIFSIPLFSFSEE 222
           GR+ ++A+AW     IP F F+ +
Sbjct: 823 GRVVDRARAWCSTIGIPYFRFNPQ 846


>AY122192-1|AAM52704.1|  386|Drosophila melanogaster LD44515p
           protein.
          Length = 386

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 151 GRMANQAKAWNKIFSIPLFSFSEE 222
           GR+ ++A+AW     IP F F+ +
Sbjct: 322 GRVVDRARAWCSTIGIPYFRFNPQ 345


>AE014296-1767|AAN11938.2|  887|Drosophila melanogaster CG6718-PD,
           isoform D protein.
          Length = 887

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 151 GRMANQAKAWNKIFSIPLFSFSEE 222
           GR+ ++A+AW     IP F F+ +
Sbjct: 823 GRVVDRARAWCSTIGIPYFRFNPQ 846


>AE014296-1766|AAN11937.2|  887|Drosophila melanogaster CG6718-PC,
           isoform C protein.
          Length = 887

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 151 GRMANQAKAWNKIFSIPLFSFSEE 222
           GR+ ++A+AW     IP F F+ +
Sbjct: 823 GRVVDRARAWCSTIGIPYFRFNPQ 846


>AE014296-1765|AAN11936.2|  887|Drosophila melanogaster CG6718-PB,
           isoform B protein.
          Length = 887

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 151 GRMANQAKAWNKIFSIPLFSFSEE 222
           GR+ ++A+AW     IP F F+ +
Sbjct: 823 GRVVDRARAWCSTIGIPYFRFNPQ 846


>AE014296-1764|AAF50194.3|  877|Drosophila melanogaster CG6718-PA,
           isoform A protein.
          Length = 877

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 151 GRMANQAKAWNKIFSIPLFSFSEE 222
           GR+ ++A+AW     IP F F+ +
Sbjct: 813 GRVVDRARAWCSTIGIPYFRFNPQ 836


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,874,832
Number of Sequences: 53049
Number of extensions: 177355
Number of successful extensions: 489
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 465714480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)