Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f20
         (285 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-4|AAK18888.1|  436|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    26   5.0  
AF067937-2|AAF99916.1|  381|Caenorhabditis elegans Choline kinas...    25   8.7  

>U80024-4|AAK18888.1|  436|Caenorhabditis elegans Hypothetical
           protein C18B10.6 protein.
          Length = 436

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 10  KFSKYDRVIGFELIKKE*GIPSHPGV-ESDNRFNTN*SSGKENEHAKLGRMANQAKAWNK 186
           KFSK D ++GF L      +P+H  + +S+  FNT     +E+ H KL  + +    W  
Sbjct: 272 KFSKIDEILGFHL------VPNHGDLWQSNMLFNT-----EESGHLKLKALID----WQA 316

Query: 187 IFSIP 201
           + ++P
Sbjct: 317 VANLP 321


>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 64  GIPSHPGVESDNRFNTN 114
           G+P  PG+  D+ FNTN
Sbjct: 105 GVPRKPGMTRDDLFNTN 121


>AF067937-2|AAF99916.1|  381|Caenorhabditis elegans Choline kinase b
           protein 4 protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 181 SKLSPDSPSSLI*RVH 134
           +KLSPD+PS  + R+H
Sbjct: 64  TKLSPDTPSCFLIRIH 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,900,137
Number of Sequences: 27780
Number of extensions: 101768
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)