Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f19
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical pr...   122   2e-28
Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical p...    99   1e-21
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    30   1.2  
Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical
           protein T21C9.4 protein.
          Length = 103

 Score =  122 bits (295), Expect = 2e-28
 Identities = 52/95 (54%), Positives = 72/95 (75%)
 Frame = +3

Query: 132 MSHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQLFDF 311
           MSHTILL+QP    E+R++SDYE+  +C+EG+C++YEE+LK++ P    ITYDIS LF+F
Sbjct: 1   MSHTILLLQPTDNIESRSWSDYENTTECLEGICRVYEEYLKKKVPAQNEITYDISHLFEF 60

Query: 312 VDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLL 416
           +D L DLS LV   +T TY P+NK ++KE IY L+
Sbjct: 61  IDDLKDLSMLVLDNTTYTYVPHNKQYVKESIYKLM 95


>Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical
           protein F35G12.11 protein.
          Length = 113

 Score =   99 bits (238), Expect = 1e-21
 Identities = 37/95 (38%), Positives = 70/95 (73%)
 Frame = +3

Query: 135 SHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFV 314
           SHT+LL+Q  PR ++RT+ DYESV D ++ +CK++E+ L ++  +   +TYD+SQ+++F+
Sbjct: 5   SHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKK--SAAPVTYDVSQVYEFL 62

Query: 315 DQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLR 419
           D+L+D+S +++ + T  Y    + WIK+++Y ++R
Sbjct: 63  DKLSDVSMMIFNRETGQYIGRTRAWIKQQVYEMMR 97


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 246 HLKRRNPNTPTITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDW 389
           H+  +N  TPTI     Q  D   QL D+   + Q++   Y  +NK W
Sbjct: 243 HVNVQNVLTPTIDAMFGQPPDAFCQLPDIPLTLCQQALLAYREHNKQW 290


>Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical
           protein F58A4.4 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 290 YITTLRFCRPVGRSELFSLSEIYK 361
           +IT  +F   VGR +L SLSE YK
Sbjct: 239 FITEYKFMSEVGRDDLRSLSETYK 262


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 279 ITYDISQLFDFVDQLADLSCLVYQKSTNT 365
           +TYD+ +LFD+V++L DLS L     T T
Sbjct: 389 LTYDL-RLFDYVEKLKDLSSLKNIVETTT 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,109,889
Number of Sequences: 27780
Number of extensions: 301274
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)