Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f17
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    28   1.2  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   4.9  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   8.6  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.6  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 720 PKNEYSRR*KRYKKVLKFYIISSYPDFIMDEMKHEIFGPPV 598
           PK  Y+ R K+ + +L+   ++S  D +++   HE  G P+
Sbjct: 73  PKENYNARKKKEQGILQMERLNSSYDLLIEPQSHETPGKPL 113


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 666 YIISSYPDFIMDEMKHEIFGPPVTVS 589
           Y+ISSYP + M+++     G PV VS
Sbjct: 488 YLISSYPQYTMEDLNRS-NGLPVIVS 512


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 237 FYSEFKNVLQVSFPETDGFSFQDIVF 314
           F +  K  L  +FP +D    +DI+F
Sbjct: 72  FQNNLKKQLSAAFPSSDTMQLEDIIF 97


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 262 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLC 158
           KT+ NSL  S+I +    +  V V+ RI R   LC
Sbjct: 407 KTYRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLC 441


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 394 LIYHVKIFYINYEQIIAICFYFGILMSFDFMYIYSYVSTV 513
           ++  ++IF IN++ I  I FY G    FD   I + +S +
Sbjct: 251 ILCFMQIFCINWDGIARIQFYLG---KFDISLIMALISAI 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,922
Number of Sequences: 5004
Number of extensions: 55119
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)