Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f16
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    32   0.10 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.97 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.0  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   3.9  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    26   5.2  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   5.2  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   9.1  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.1  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -1

Query: 601 KLVSFSIEEFLNEIANSGCSCLYKHCLNIGWNLPSGVLAQSGPTQFPSMHLILQINL 431
           K+VS+S+EE LN + +     L+       WN   GVL +SGP++  ++   L+ NL
Sbjct: 194 KVVSWSLEEELNYLKDK---ILFAPDNQSAWNYLCGVLDKSGPSKLDNLIANLRKNL 247


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +3

Query: 243 LLIFIPFVVSEDTGIDDFSEEDFKCSLPDVTSPNQKVDINRIRADFSKISEVKF 404
           ++  IP+  +ED  +++ + E+ K S      P+  +  +++ A  S+I +VKF
Sbjct: 184 MMAIIPYPANEDLDMEEAAIENSKISSSYAYKPSFVLASSQLDASISRILDVKF 237


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +3

Query: 450 KCIDGNWVGPLCAS-TPD 500
           K ++GNWV  +CAS TPD
Sbjct: 921 KTVEGNWVHLICASWTPD 938


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +3

Query: 606 HGSSIVARCIHFGFYKLKGDNTMHCENGEWVPKFPECVPTSVITNFTGDAPP 761
           H   I  RCI +  Y ++ D     E G  +  FP   P+    +F    PP
Sbjct: 142 HDDVIGTRCISYILYLVEPDEGWKPEYGGALRLFPTLQPSFPAADFCHSIPP 193


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 625 ATIEEPCGKLVSFSIEEFLNEIANSG 548
           A IEE  GK    SIE+ ++EI N G
Sbjct: 173 ALIEEALGKYDVISIEDIIHEIYNVG 198


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 598 LVSFSIEEFLNEIANSGCSCLYKHCLNIGW-NLPSGVLAQSGPTQFP-SMHLILQINLSF 425
           L S  ++  + E++ SG  C+++ C N    ++P+  +  +     P S H +  + +++
Sbjct: 224 LSSVCVQYPMPELSRSGLDCIFQLCPNATTISIPANYITSTAFESIPESGHNVRSLEITY 283

Query: 424 NGPI 413
           +G +
Sbjct: 284 SGSL 287


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -2

Query: 720 ERILETLAPTPHSHSALCYLLSAYKNRNVYTLPLLKSHVEN*FLFQLKNF*MKLLIVDVR 541
           ER+L+ L PTP S S L Y  S     +V+  P  K H+E   L +  +   K ++    
Sbjct: 203 ERLLDPLWPTPDSQSMLEYAGSI--EPSVFWFP--KKHLEEAILEETSHLSFKEVLSSTT 258

Query: 540 VCISTAL 520
             + T L
Sbjct: 259 ANMITPL 265


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 354 DINRIRADFSKISEVKFPGLIGPLNE 431
           ++N +  DF  IS++K   L   LNE
Sbjct: 130 EVNFVNGDFEDISDIKLEQLSAKLNE 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,935
Number of Sequences: 5004
Number of extensions: 63238
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)