Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f16
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z81078-4|CAJ15165.1|  392|Caenorhabditis elegans Hypothetical pr...    35   0.074
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    31   0.91 
U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    29   3.7  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    29   3.7  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    29   3.7  
AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical ...    29   3.7  

>U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.4 protein.
          Length = 702

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 540 HEHPLLAISFRNSSIEKETSFPHGSSIVARCIHFGFYKLKGDNTMHCENGEWVPKFPECV 719
           + H ++  + +  ++    +F  GS ++ RC + G  +L G   + C NG W    P C+
Sbjct: 317 NSHTVIYHTQKKETVVFNQNFESGSKLLFRCANIGLEQLHGKKELQCYNGVWSSPIPYCI 376

Query: 720 P 722
           P
Sbjct: 377 P 377



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 639 FGFYKLKGDNTMHCENGEWVPKFPECVPTS 728
           F   ++ G +T  C NG+W P+  EC+P S
Sbjct: 13  FASERVVGKST--CVNGKWKPEIAECIPKS 40



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/103 (21%), Positives = 38/103 (36%)
 Frame = +3

Query: 426 NERLICKIKCIDGNWVGPLCASTPDGRFQPILRQCLYKHEHPLLAISFRNSSIEKETSFP 605
           +ER++ K  C++G W   +    P     PI         H     +  +  ++      
Sbjct: 15  SERVVGKSTCVNGKWKPEIAECIPKSCRVPI-------RLHVFFLKAGTSQILQSNDVVE 67

Query: 606 HGSSIVARCIHFGFYKLKGDNTMHCENGEWVPKFPECVPTSVI 734
            G+     C+  GF+ L G+  + C  G+       CVP   I
Sbjct: 68  DGTVAQMACLR-GFH-LSGNGVLECIKGDLREPLGHCVPQECI 108



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 570 RNSSIEK-ETSFPHGSSIVARCIHFGFYKLKGDNTMHCENGEWVPKFPECVPTSVITNF 743
           R + I++ +T++P+G+    +C        +    + C NGEWV     CV T+ ITN+
Sbjct: 180 RKTHIDRYQTAYPNGTIFQFKC-----NDKEEAGGIECVNGEWVSNLLPCV-TANITNW 232


>Z81078-4|CAJ15165.1|  392|Caenorhabditis elegans Hypothetical
           protein F36H2.5 protein.
          Length = 392

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
 Frame = +3

Query: 393 EVKFPGLI--GPLNERLICKIKCIDG-NWVGPLCASTPDGRFQPILRQCLYKHEHPLLAI 563
           E+ F G    G   +     +KC  G    GP  ++   G F+PI+ +C    EH L  +
Sbjct: 269 EITFSGFSTKGTFEDGTTAALKCNLGYKPTGPSFSTCRKGSFRPIIGKCSNGSEHQLPGV 328

Query: 564 --------SFRNSSIEKETS--FPHGSSIVARCIHFGFYKLKGDNTMHCENGEWVP 701
                   + R   I+  TS  F  G++ +  C   GF  + G  T+ CE G+W P
Sbjct: 329 CVPLTPPKNARVVYIQSGTSLDFEDGTTALLYC-EEGF-AVTGVATLRCETGQWEP 382



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 597 SFPHGSSIVARCIHFGFYKLKGDNTMHCENGEWVPK 704
           SF  G+ +  RC    +    GD +  C NG W PK
Sbjct: 35  SFTTGTIVTLRC-DTNYAATNGDTSAICTNGVWSPK 69


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 600  FPHGSSIVARCIHFGFYKLKGDNTMHCENGEWVPKF 707
            FP G+++   C + G   + G +T  C NG W P F
Sbjct: 1007 FPSGTTVTGSCTNGG--AITGASTATCSNGMWNPTF 1040



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/95 (21%), Positives = 37/95 (38%)
 Frame = +3

Query: 453  CIDGNWVGPLCASTPDGRFQPILRQCLYKHEHPLLAISFRNSSIEKETSFPHGSSIVARC 632
            C+ G W  P   +T  G    +  QC+         +++ + S+   ++   G++    C
Sbjct: 1164 CLVGQWT-PAITATCSGSSTAVGSQCIGVIVPTNAQVTYSDGSMVLHSA---GTTATLTC 1219

Query: 633  IHFGFYKLKGDNTMHCENGEWVPKFPECVPTSVIT 737
            ++     L G +   C NG W P    C  +   T
Sbjct: 1220 LNSA--TLTGSSYSSCSNGVWTPTLGSCTSSGTGT 1252



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 600 FPHGSSIVARCIHFGFYKLKGDNTMHCENGEWVPKFPECVPTSVITNFTG--DAPPT 764
           +  G+S    C + G Y L G  +  C NG W P   +C     +   TG  +A PT
Sbjct: 445 YSSGTSAYLMC-NLG-YSLSGSVSTLCSNGVWSPSIGQCTNALALGQTTGNCEAIPT 499


>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 513 PILRQCLYKHEHPLLAISFRNSSIEKETSFPHGSSIVARCIHFGFYKLKGDNTMHCENGE 692
           PI+ Q     E+ +L  S  N+      S P+GS+     +H+G +++    T +C  GE
Sbjct: 124 PIIGQFCGHFENRILNTSSHNALTLWWHSNPNGSNSKGFKLHWGSFRV--SKTGNCVTGE 181

Query: 693 WVPKFPECVP 722
           +     EC+P
Sbjct: 182 FSCGNGECIP 191


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 513 PILRQCLYKHEHPLLAISFRNSSIEKETSFPHGSSIVARCIHFGFYKLKGDNTMHCENGE 692
           PI+ Q     E+ +L  S  N+      S P+GS+     +H+G +++    T +C  GE
Sbjct: 130 PIIGQFCGHFENRILNTSSHNALTLWWHSNPNGSNSKGFKLHWGSFRV--SKTGNCVTGE 187

Query: 693 WVPKFPECVP 722
           +     EC+P
Sbjct: 188 FSCGNGECIP 197


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 513 PILRQCLYKHEHPLLAISFRNSSIEKETSFPHGSSIVARCIHFGFYKLKGDNTMHCENGE 692
           PI+ Q     E+ +L  S  N+      S P+GS+     +H+G +++    T +C  GE
Sbjct: 130 PIIGQFCGHFENRILNTSSHNALTLWWHSNPNGSNSKGFKLHWGSFRV--SKTGNCVTGE 187

Query: 693 WVPKFPECVP 722
           +     EC+P
Sbjct: 188 FSCGNGECIP 197


>AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical
           protein H34I24.2 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 583 IEEFLNEIANSGCSCLYKHCLNIGWNLPSGVLAQSGPTQFPSMHLILQINLSFNGPIKPG 404
           +E+F+ ++ ++  +CLY+ CL      P        PT  P+    L  N + +GP +  
Sbjct: 226 VEKFIGQVNSAQGNCLYQRCLKPTTPAPPTTSTAPPPTTTPNP--CLAFNCTGSGPCQLD 283

Query: 403 NL 398
           +L
Sbjct: 284 SL 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,548
Number of Sequences: 27780
Number of extensions: 350083
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)