Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f16
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              27   0.15 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.78 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.0  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   3.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   3.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.6  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 231 MQLLLLIFIPFVVSEDTGIDDFSEEDFKCSLPDVTSPNQKVDI 359
           +Q+ L   IP V   D+GID+  E+DF+  + DV   N+KV +
Sbjct: 22  LQIGLRAVIP-VCRIDSGIDEKKEDDFRNGIIDV--ENEKVQL 61


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 604 GKLVSFSIEEFLNEIANSGCSCLYKH 527
           GK+VS +   FL  + NSG +C+ +H
Sbjct: 311 GKVVSKNGVLFLGLVGNSGIACVNEH 336


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 210 NQSINTIMQLLLLIFIPFVVSEDTGIDDFSEEDFK--CSLPDVTSPNQKVDINRIRAD 377
           N  +N  ++  L+    FV SE       S+ D +  C +  +  P+QK++IN I  D
Sbjct: 55  NNLLNAYVRFKLVTDCIFVTSEPGYFLYTSKNDNEEVCGIYFLAEPDQKIEINFITFD 112


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 420 PLNERLICKIKCI 458
           P +ERL+C +KCI
Sbjct: 63  PQDERLMCYMKCI 75


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 420 PLNERLICKIKCI 458
           P +ERL+C +KCI
Sbjct: 37  PQDERLMCYMKCI 49


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 300 EEDFKCSLPDVTSPN 344
           +ED KCS+  +TS N
Sbjct: 398 DEDQKCSIESITSVN 412


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 357 YQLFD*DWLHQV 322
           Y++ D DWLH +
Sbjct: 76  YRILDVDWLHNI 87


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 511 WNLPSGVLAQSGPTQFPSMHLILQINLS 428
           W L SG++  + P   P +H +  +N S
Sbjct: 140 WILDSGIINNTQPMCSPKLH-VFDLNTS 166


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 690 PHSHSALCYLLSAYKNRNV-YTLPLLKSHVEN 598
           P +     Y L+ YK+++V  TLP L  H++N
Sbjct: 658 PANIEGTSYFLNDYKHKDVDVTLP-LDLHIQN 688


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 433 LSFNGPIKPGNLTSDILEK 377
           LSF GPIK  +L+  +LE+
Sbjct: 98  LSFLGPIKSLSLSIKMLER 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,255
Number of Sequences: 438
Number of extensions: 4183
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)