Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3f13
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 28 1.2
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.6
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 4.8
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 4.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 4.8
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 26 6.3
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 6.3
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 26 6.3
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 25 8.3
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 8.3
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 599 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPE 703
QE FR +E+EKR A K ++ +IPA T E
Sbjct: 251 QEQFRLERENREKEKRRIAAQRKLEEASIPAFTEE 285
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 498 LIVKMGLTLFDYPWHLFLRPQLQKKSENVTRKRNRKLFVSGWRARS-KKNAKRRVWKNKN 674
LI + + L+D P H ++ +L+K+ + +N K+FV+ + K W
Sbjct: 525 LIDQHPVILYD-PIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPE 583
Query: 675 NT 680
NT
Sbjct: 584 NT 585
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +3
Query: 546 FLRPQLQKKSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 698
++ ++ RN V+ +A + KRR+ KN+NN + H
Sbjct: 881 YIDQHFASSKSGISNGRNNNKEVNLTKAENVGIKKRRIMKNENNIYDFEDH 931
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 635 QEKREKARLEKQKQHTIPATTPEQREA 715
Q K EK+ K K HT ATT R +
Sbjct: 157 QPKAEKSTTSKSKSHTTTATTHTSRSS 183
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 536 RIVEKCQAHLHDKYDRYEVCLHLYKLECDLPVMYKIFFSDLLKIHSNPV 390
R++ K AH HD D+ ++ L Y L Y + +L + + PV
Sbjct: 34 RVIIKSNAHKHDPSDKRQIWLEKYYLFVRQIYTYLVTHKVILTLIAVPV 82
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 113 GHFGDSARNRSDCEL-KRYNHVFDEAGENTHYHSDSDSVASRKSKTRYIN 259
G F N S+ ++ K NHV + + T YH+D+ +A Y+N
Sbjct: 180 GKFKKFVVNHSETDIDKNDNHVSVQTEDGTIYHADTILLAVGAYLNAYLN 229
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 188 GENTHYHSDSDSVASRKSKTRYINPAIYVEKIE 286
G++T Y DS+ + KS+ Y+ A+ KIE
Sbjct: 47 GDHTQYAGLRDSLVTYKSENSYVLKALLNAKIE 79
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 423 FRLVEDTLESRPLKNGVELLL*SLCGCGVTSSTQEP 316
+ +V+ L S+ K G+E + S C CG+ SS EP
Sbjct: 77 YGVVDPVLASQASKAGLETIFVSGCLCGL-SSVDEP 111
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 600 RKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPH 698
RKL G + RS K + R+WK + L H
Sbjct: 60 RKLHAEGSKERSFKMVQGRIWKKGYESNELTSH 92
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 570 KSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNK-NNTLSLQ 692
KS + +LF+ G R + + R VW++K NN ++++
Sbjct: 470 KSMKLINNNPSRLFLHGERIHNGDLSNRTVWRSKTNNAITVE 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,987
Number of Sequences: 5004
Number of extensions: 60782
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -