Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f13
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical p...    33   0.27 
Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel...    28   7.8  
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel...    28   7.8  
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel...    28   7.8  
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag...    28   7.8  
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu...    28   7.8  
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu...    28   7.8  
AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical...    28   7.8  
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen...    28   7.8  

>U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical
           protein C34D4.1 protein.
          Length = 512

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 611 RQWLARKEQEKREKARLEKQKQHTIPATTPEQREAS 718
           ++WL +KE+E REK   EK       AT  E+RE S
Sbjct: 267 KEWLQKKEREIREKKAKEKAAAEQKAATEKERRENS 302


>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 567 KKSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQPHPN 704
           KKS+ + +K+N+K      ++ S+KN K +  K K+ + S  P PN
Sbjct: 213 KKSKKIKKKKNKKS-KDKKKSNSRKNKKNKKSKGKSTSTSEPPTPN 257


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 561  LQKKSENVTRKRNRKLFVSGWRARSKKNAKRRVWKNKNNTLSLQP 695
            L+ KS+ + R    KL  + WR ++++N ++  WK K++  S+ P
Sbjct: 899  LEMKSQ-LLRIEREKLMQTSWRQQTQENEEKETWK-KDSRASISP 941


>Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical
           protein K10D3.3 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +2

Query: 626 RKEQEKREKARLEKQKQHTIPATTPE 703
           R+E+++R++ R EK+K++ + A +PE
Sbjct: 171 REEEQRRKRLREEKEKENAMRAASPE 196


>Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical
           protein T08G5.2 protein.
          Length = 728

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 456 FKFI*MKTHLVTIVLIVKMGLTLFDYPWHLFLRPQLQKKSENVTR-KRNRKLFVSGWRAR 632
           FKF   + H   I L + +  + +    H   RPQ+Q + E + +  R R +      AR
Sbjct: 257 FKFSTAELHFKNIFLKIPVDKSAWQISLHNPERPQIQMEFEIIFKHARFRNVKYRAIFAR 316

Query: 633 SKKNAKRR 656
           SK+N  RR
Sbjct: 317 SKENEDRR 324


>AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical
           protein C45H4.14b protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 599 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQRE 712
           QE   Q    KEQ K+EKA L+K+ +  +     E+R+
Sbjct: 35  QERQAQKKGAKEQAKKEKAELKKEAKELLKKEKAEERK 72


>AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical
           protein C45H4.14a protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 599 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQRE 712
           QE   Q    KEQ K+EKA L+K+ +  +     E+R+
Sbjct: 82  QERQAQKKGAKEQAKKEKAELKKEAKELLKKEKAEERK 119


>Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical
           protein R11D1.7 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 339 VTSSTQEPVCSDVTECVASIFST*MAGLMYLVLLFLDATES 217
           +   T E V S +  C+  +F+T    ++YL +L L A ES
Sbjct: 60  IDKQTDEQVASHM--CLFEVFATLFVNIIYLSMLHLSAVES 98


>Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical
           protein C11H1.3 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 146 DCELKRYNHVFDEAGENTHYHSDSDSVASRKSKTR 250
           DCE K+     D+  ++   HSD DSV + +   R
Sbjct: 469 DCESKKSEESEDDERKSQAAHSDDDSVTANEDSAR 503


>Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical
           protein F52H3.4 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/67 (23%), Positives = 24/67 (35%)
 Frame = +2

Query: 179 DEAGENTHYHSDSDSVASRKSKTRYINPAIYVEKIEATHSVTSLQTGSCVDDVTPHPHSD 358
           + A EN+    D  SV   K+ TR+I P      I +           C D  + +    
Sbjct: 69  ENADENSKNKEDPQSVVKEKTTTRFIKPKSEYVSISSDSESEEDSDSECSDSDSVNEFFA 128

Query: 359 YRSNSTP 379
           Y+    P
Sbjct: 129 YKPPEAP 135


>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform a protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 599  QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASY 721
            +EA  + +  KE+EKR K +L++QK     A   ++ E +Y
Sbjct: 1381 KEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKMERNY 1421


>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform d protein.
          Length = 1885

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 599  QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASY 721
            +EA  + +  KE+EKR K +L++QK     A   ++ E +Y
Sbjct: 1429 KEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKMERNY 1469


>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform e protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 599  QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASY 721
            +EA  + +  KE+EKR K +L++QK     A   ++ E +Y
Sbjct: 1388 KEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKMERNY 1428


>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
            sensitive calciumchannel alpha1 subunit isoform D
            protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 599  QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASY 721
            +EA  + +  KE+EKR K +L++QK     A   ++ E +Y
Sbjct: 1388 KEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKMERNY 1428


>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
            channel alpha1 subunitisoform B protein.
          Length = 1885

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 599  QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASY 721
            +EA  + +  KE+EKR K +L++QK     A   ++ E +Y
Sbjct: 1429 KEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKMERNY 1469


>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
            channel alpha1 subunitisoform A protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 599  QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASY 721
            +EA  + +  KE+EKR K +L++QK     A   ++ E +Y
Sbjct: 1381 KEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKMERNY 1421


>AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical
           protein Y37A1B.15 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 413 LKIHSNPVHLRMGSNYSCNRCVGAE*RHQHKNPSAVTSLNALLQSFQRKW 264
           LKI SN   +  G N  CN C+ AE  H  +       +  L ++F RKW
Sbjct: 29  LKIWSNTEIVLAGGNVICNLCI-AEKSHAVQFDRKY-MIKTLSKTFSRKW 76


>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
            calcium channelalpha13 subunit protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 599  QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASY 721
            +EA  + +  KE+EKR K +L++QK     A   ++ E +Y
Sbjct: 1381 KEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKMERNY 1421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,428,481
Number of Sequences: 27780
Number of extensions: 338011
Number of successful extensions: 1182
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)