Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f10
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    29   0.50 
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    29   0.66 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    28   1.5  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   2.6  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    27   3.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   4.6  
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    25   8.1  

>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 164 DVDTIGIYVGG-RNADGERHGEGWAVLPNGDFYTGCYCRGMRNGKGLYVFKNGA 322
           D D +  Y+ G +N DG   G+ W  +     Y+G  C  +  GK  Y+ KN A
Sbjct: 101 DKDKVASYIIGLQNEDGSMKGDRWGEIDARFLYSGINCLAIL-GKLDYLNKNTA 153


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 424 FQVVFPIAFVSRTVWVYHLSDPVFHGSAPFTFVSSSVFKYIQSLS 290
           FQVV P  + S T  +  L  PV HGS+    + SS F +  +LS
Sbjct: 169 FQVVEPSMYTSLTTTLSILPFPVNHGSSFGQELKSSAFLFRNNLS 213


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -2

Query: 349 GSAPFTFVSSSVFKYIQSLSVPHAPTVTACIEIAIR*NSPAFSVAFAISIATAYVNPNGI 170
           GS+P   +SSS  +Y  SL  P   T T+    ++  NS  F   F+ S    YV  +G 
Sbjct: 389 GSSPINRLSSSFKQYTSSLKSPGLSTRTSSTMNSL--NSSRFGAYFSKS---RYVEGSGS 443

Query: 169 NIFRPLSLFFDHSF 128
               PL+   ++S+
Sbjct: 444 MSTTPLATSVNNSY 457


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 414 CFQSPSYREPSGYIICPTPYFMALRHSPSYLAPF 313
           C+Q  +  +P  Y+  P P     RH   Y+ PF
Sbjct: 445 CYQKSTAFDPFMYLTLPLPTSAKWRHKVVYVPPF 478


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 529 FRVCIEIRSKTVSFSFKPGAFVNIPVGVAI 440
           + VC+  RSK V   F+P + +N+ +G ++
Sbjct: 219 YTVCLGRRSKFVEEQFRPHSVLNVVLGTSL 248


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 438  APKPCFRSCFQSPSYREPSGY 376
            AP+P     FQSP Y +P+G+
Sbjct: 1028 APQPMAADPFQSPLYVQPTGF 1048


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 254 FYTGCYCRGMRNGKGLYVFKNGARYEGEW 340
           FY     R +RNG  L  FK     EGEW
Sbjct: 633 FYFNLLHRKVRNGCALLHFKETEILEGEW 661


>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 544 PHKFNFRVCIEIRSKTVSFSFKPGAFV 464
           P  F F   +EI+ +  SF   PG  +
Sbjct: 33  PQSFGFEALVEIKPRVFSFQKAPGLLI 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,217
Number of Sequences: 5004
Number of extensions: 68947
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)