Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f10
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    27   0.18 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.93 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
 Frame = -2

Query: 568 FNCTLYPSPHKFNFRVCIEIRSKTVSFSFK------PGAFVNIPVGVAIGAETLFQVVFP 407
           FNCT Y      +   CI  R  TV           P  F+    G AIGA +       
Sbjct: 610 FNCTQYQIRDHKDVTQCISCRQGTVPDETHSACRDIPEEFLRPESGWAIGAMSFSATGIL 669

Query: 406 IAFVSRTVWVYHLSDPVFHGSA---PFTFVSSSVFKYIQSLSVPHAPTVTAC 260
           I      V++ H   PV   S     +  +S  +  Y+ + ++   PT   C
Sbjct: 670 ITLFVCGVFLKHNDTPVVRASGRELSYVLLSGILLCYLVTFALVLRPTDIVC 721


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 299 LYVFKNGARYEGEWRRAMKYGVGQMIYPDGSRYEGDW 409
           LY+  NG  ++ E+       +G  +Y  GS  E DW
Sbjct: 362 LYLTYNGTVHDVEFPGXYTMVIGSGVYRIGSSVEFDW 398


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 287 SSCPYSNSLYRNRHSVEQPSLLRGVR 210
           S CP + SL  + HS    SL+ G R
Sbjct: 690 SQCPQTASLLSSTHSTLARSLMEGPR 715


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -1

Query: 461 YPRWG--SYRRRNLVSGRVSNRLRIENRLGIS 372
           Y RW   S  R  LV GRV   LRI  ++  S
Sbjct: 259 YLRWNLTSGERVGLVGGRVKEALRIARQMTTS 290


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 325 SSSVFKYIQSLSVPHAPTVTACIEI 251
           S +V+K +      HAP  T  ++I
Sbjct: 46  SGAVYKVVDQTGPTHAPIFTIAVQI 70


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 695 WSTGEIHAAYNRCQKRNNPF 636
           W     H AYN    +N PF
Sbjct: 204 WKDKRSHPAYNMTFAQNGPF 223


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 423 NKVSAPIATPTGIFTKAPGLKENDTVLERISMQTRKLNLW 542
           N++  P+   T   T   GLK +  +   +  Q    N+W
Sbjct: 46  NRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW 85


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 13 FIVIHFLRTGFD*VPSVFIYTYRI 84
          F++  FLRT     P+ F +TY I
Sbjct: 23 FVLFSFLRTRTKLQPTYFHHTYII 46


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 13 FIVIHFLRTGFD*VPSVFIYTYRI 84
          F++  FLRT     P+ F +TY I
Sbjct: 23 FVLFSFLRTRTKLQPTYFHHTYII 46


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 287 SSCPYSNSLYRNRH 246
           +SC YSN+ Y N +
Sbjct: 309 NSCNYSNNYYNNNN 322


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +2

Query: 239 LPNGDFYTGCYCRGMRNGKGLYVFKNGARYEGEWRRAMKYGVGQ 370
           L    F +  Y  G++NG  + +    + +   W + +++ VGQ
Sbjct: 365 LEGASFRSKPYRFGIQNGDYVVLETEWSSFINPWTKKLEFVVGQ 408


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 349 HEIRGRTNDIPRRFSIRRRLETRPETRFR 435
           H I  RTN+I    ++   L  RP  R R
Sbjct: 259 HSILNRTNNIFELVTVEPILTERPSDRQR 287


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +2

Query: 239 LPNGDFYTGCYCRGMRNGKGLYVFKNGARYEGEWRRAMKYGVGQ 370
           L    F +  Y  G++NG  + +    + +   W + +++ VGQ
Sbjct: 71  LEGASFRSKPYRFGIQNGDYVVLETEWSSFINPWTKKLEFVVGQ 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,257
Number of Sequences: 438
Number of extensions: 5293
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)