Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f08
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   2.0  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   2.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.4  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   6.0  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   7.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.9  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.9  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 231 ALLCLPTCWLSTLVPYY 281
           A+L +PTC    +VPY+
Sbjct: 126 AILIIPTCVAMFIVPYF 142


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 12  YVIQFKNYKKYLVTE 56
           YV++ +NY+KY V E
Sbjct: 195 YVVEGRNYRKYRVEE 209


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 429 SSPAPCSRSERPARGERATGP*SNLYPMIS 340
           SS +P   S + +    +T P + +YP +S
Sbjct: 36  SSSSPSGSSPQHSSSSASTSPAARMYPYVS 65


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 429 SSPAPCSRSERPARGERATGP*SNLYPMIS 340
           SS +P   S + +    +T P + +YP +S
Sbjct: 36  SSSSPSGSSPQHSSSSASTSPAARMYPYVS 65


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 143 CRSAQDGTTAKQESSACKQNQTTTSHVDYFSN 48
           C S+Q   +    ++ C  N    S++DY S+
Sbjct: 236 CSSSQPVLSTTNSTTNCYNNYPYYSNMDYLSS 267


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 741 PPSLECKLP*TTSPP 697
           PP+ +C +P T  PP
Sbjct: 202 PPTEDCDVPSTIPPP 216


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 151 LHAADPPKMAPPLNKSP 101
           +H   PP   PP+ + P
Sbjct: 198 MHQQGPPHQQPPIQQQP 214


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   LYVIQFKNYKKYLVTEIVNMRSSGLVLF 92
           LY+I   N  KY  T I  +++  +V+F
Sbjct: 236 LYIILTNNQAKYCTTLIGLIKNCVIVIF 263


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 151 LHAADPPKMAPPLNKSP 101
           +H   PP   PP+ + P
Sbjct: 200 MHQQGPPHQQPPIQQQP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,876
Number of Sequences: 336
Number of extensions: 3751
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)