Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3f08
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 31 0.73
11_06_0610 - 25449085-25453284 29 5.1
08_02_0638 + 19603399-19604679 29 5.1
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 29 5.1
07_03_0604 + 19903654-19904598 28 6.8
06_01_0931 + 7192519-7194075 28 6.8
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 28 6.8
01_05_0130 - 18434678-18435688 28 9.0
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 31.5 bits (68), Expect = 0.73
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 476 HGSERASDRRIDGIQHHRLRHARVQSGRLAESARQARNRT 357
H SER DR DG + HR R GR S ++R+R+
Sbjct: 131 HDSERRRDRDRDGHRRHRSRSRSPSKGRDRRSRSRSRSRS 170
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = -1
Query: 247 GRHSSAPAMKSTLEDSS-TPRSEVQK*YDIRNRLHAADPPKMAPPLNKSP 101
G S P +E S TP SE H PPK +PP KSP
Sbjct: 701 GHMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSP 750
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -1
Query: 241 HSSAPAMKSTLEDSS--TPRSEVQK*YDIRNRLHAADPPKMAPPLNKSP 101
H+ +P + + S TP SE H PPK PP+ KSP
Sbjct: 669 HTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSP 717
>08_02_0638 + 19603399-19604679
Length = 426
Score = 28.7 bits (61), Expect = 5.1
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Frame = -2
Query: 717 P*TTSPPCRRS*RMLEPTASSHSSVAE*GRDASNPSGTRENHTFPRAFH*KHVRSTPEDT 538
P PP R L P SS S A NPS R F KH S
Sbjct: 161 PPFAGPPARSRFDHLFPAPSSLRSAAT-AAGGGNPSSLPAY--LLRPFAQKHHPSPFPPF 217
Query: 537 SFGAYTNPS*NSLR-STSTRVAWQRKSFGPQDRWHPASSPA 418
+ ++PS +++ +TST A P DR+H AS+P+
Sbjct: 218 PSPSTSSPSPSNIAIATSTAAATTAAVAAPGDRYHLASAPS 258
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +3
Query: 444 DPAVRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRGERCDFPLYPTGCL 623
DP R + +L K V+ N KHR C + E+ D + L
Sbjct: 239 DPEERQMVSLNRLFEKHRDVSLNRLLEKHRDEEMQESCSTDKEGEEDEKIDTLSFEQSIL 298
Query: 624 RPALIQLRNYVNSLSALASAMIVCM 698
+ ++L N N+ + L+ M+ CM
Sbjct: 299 KITSMKLGNLWNNPNQLSEEMVRCM 323
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 6.8
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -3
Query: 473 GSERASDRRIDGIQHH---RLRHARVQSGRLAESARQARNRTYTQ*YHEH*RH**GH*GS 303
G R RR++G H RL H RV+ R+ + R +R R + R G+
Sbjct: 81 GGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGEEGQGRRPRVPAGA 140
Query: 302 Q*RNRFRVIRHKGGQ 258
Q R R R H GQ
Sbjct: 141 QLRRRRRAHGHGHGQ 155
>06_01_0931 + 7192519-7194075
Length = 518
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 444 RWHPASSPAPCSRSERPARGERATGP*SNLYPMIS*TL 331
RW P+S P P S S P+ A P L P IS TL
Sbjct: 7 RWRPSSPPMPSSSSSSPSSSFTADPPAEFLCP-ISGTL 43
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 241 HSSAPAMKSTLEDSSTPRSEVQK*YDIRNRLHAADPPKMA 122
HSS+P + ED S +EVQK + RL D P M+
Sbjct: 264 HSSSPIKRIIHEDVSFRTNEVQKRPSVIARLMGMDSPPMS 303
>01_05_0130 - 18434678-18435688
Length = 336
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 136 PPKMAPPLNKSPAHANKTKPLLLMLTISVTKYFL 35
PP +PP+ SP+H LL + + T Y L
Sbjct: 78 PPAASPPVVSSPSHLVTAASLLRLPPLPATSYLL 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,897,301
Number of Sequences: 37544
Number of extensions: 473795
Number of successful extensions: 1712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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