Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3f04
(720 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ518940-1|CAD57734.1| 361|Tribolium castaneum extradenticle pr... 23 1.9
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 23 1.9
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 23 1.9
AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc fin... 23 2.5
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 23 2.5
AJ969955-1|CAI94742.1| 160|Tribolium castaneum torso-like prote... 23 3.3
AJ457831-1|CAD29886.1| 249|Tribolium castaneum helix-loop-helix... 23 3.3
>AJ518940-1|CAD57734.1| 361|Tribolium castaneum extradenticle
protein.
Length = 361
Score = 23.4 bits (48), Expect = 1.9
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Frame = +1
Query: 247 EQIKELKLEDPWANRCAPQGYVVAKDEMGRRCGLAPPTNLKEVLKKAAETAKDIISKKHV 426
+Q E+ E +++ P AK+E+ R+CG+ K K+I K
Sbjct: 239 KQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI--GKAQ 296
Query: 427 DLQKCMTQKDVARALDELRGATKIVFPAGLPPHDPVRMELDNVEDLSGTQAANEV-IDPS 603
+ K A A T ++ PA PP D + + + D S A+ DP
Sbjct: 297 EEANLYAAKKAAGASPYSGTPTPMMSPA--PPQDSMGYSMGSAYDQSSAYDASSCGYDPM 354
Query: 604 RA 609
A
Sbjct: 355 HA 356
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 97 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 142
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 173 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 370
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 477 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 522
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 553 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 598
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKT 684
D +E++ E I P + L GK+ G LSD+ + + T
Sbjct: 629 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 674
>AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc finger
protein protein.
Length = 456
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +1
Query: 610 CLWA-CGKKFISGNKLSDHL 666
C W CGK+F ++L HL
Sbjct: 347 CNWLFCGKRFTRSDELQRHL 366
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 23.0 bits (47), Expect = 2.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 547 DNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDH 663
D +E++ E I P + L GK+ G LSD+
Sbjct: 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
>AJ969955-1|CAI94742.1| 160|Tribolium castaneum torso-like protein
protein.
Length = 160
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 526 HVEEVQLGRLFSLLLVAHPGPLLRLFGSCT 437
H++++QLG+ FS H G + G+ T
Sbjct: 129 HLDKLQLGQYFSPWFAEHMGQIKVASGNHT 158
>AJ457831-1|CAD29886.1| 249|Tribolium castaneum helix-loop-helix
transcription factor protein.
Length = 249
Score = 22.6 bits (46), Expect = 3.3
Identities = 18/80 (22%), Positives = 29/80 (36%)
Frame = +1
Query: 115 VNDVVKDIVAIFNGRLKVTRICHEMEELADHGTFLPLEMQGLTEEQIKELKLEDPWANRC 294
+N+ + ++ + +K H E AD +Q L +Q DP
Sbjct: 50 INNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAATDPSVVSK 109
Query: 295 APQGYVVAKDEMGRRCGLAP 354
G+ E+GR GL P
Sbjct: 110 FRAGFSECASEVGRFPGLDP 129
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,938
Number of Sequences: 336
Number of extensions: 4115
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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