Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f04
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   3.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   6.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   6.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.2  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   8.2  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +1

Query: 241 TEEQIKELKLEDPWANRCAPQGYVVAKDEMGRRCGLAPPTNLKEVLKKAAETAK-DIISK 417
           +E+Q  +LK  +      + +G V  K E  R      P N KE+ KK  + +K D+ S+
Sbjct: 127 SEKQAVDLKSSNSSQETSSSKGSVNNKSERSREAKSRMPKNSKEI-KKGLDLSKLDMTSR 185

Query: 418 KHVDLQKCMTQKDVARALDELRGATKI 498
             V+L+  + +  V    D +  +T I
Sbjct: 186 MIVELKNRLYECSV--CTDTINPSTSI 210


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 541  ELDNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHL 666
            ++D + D      +NEV+D    CL  C  K+ S N    +L
Sbjct: 1057 KVDELHDTLNLDISNEVLDQLLRCLLDCCVKYASTNMQISYL 1098


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 234 GTNRRTDKRT*TGGSVGKSLRSSRIRGCQRRNGSPL 341
           GT+  T   T TG   G S RSS +   Q  N S L
Sbjct: 185 GTSAATSNGTGTGAGTGASHRSSPVTNRQTNNTSAL 220


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 559 DLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKTKVTVKICTASE 717
           ++SG++    +   SR  ++    K  +GN+ S+   +N KT  ++K C   E
Sbjct: 741 NMSGSKNLKYIHSSSRDLIFEMENKKATGNEQSEKGKENAKTVTSLKKCVYCE 793


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 429 IHMLLTDNVLRSFSSFLENFLKVRWRGETTT 337
           +H  L +N L S  SF+ +  ++ W G  +T
Sbjct: 32  VHSSLLENSLNSIDSFISSKEEISWCGNQST 62


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 26   FESITQKWYYST*KEEMKVNSSIRQRWKSPL 118
            F+S+  KW Y    E   + SS   RWKS L
Sbjct: 966  FQSV--KWQYMILDEAQAIKSSSSSRWKSLL 994


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 138 CGDFQWKAEGYQNM 179
           CGDF W  E YQ +
Sbjct: 453 CGDFDWAQEHYQKL 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,733
Number of Sequences: 5004
Number of extensions: 63439
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)