Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3f04
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 35 0.057
05_02_0113 - 6748198-6748758 32 0.40
06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231 31 0.70
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 30 2.1
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 29 2.8
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 29 3.7
04_04_0818 + 28309950-28311344 29 3.7
03_04_0240 + 19232391-19233098 29 4.9
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215... 29 4.9
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 29 4.9
12_02_0886 + 24014478-24014565,24014929-24015413 28 6.5
08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930... 28 6.5
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 28 6.5
09_03_0049 + 11889214-11890302 28 8.6
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 28 8.6
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 28 8.6
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046... 28 8.6
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 35.1 bits (77), Expect = 0.057
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 613 LWACGKKFISGNKLSDHLGKNDKTK 687
LW GK+ G KL D++G NDKTK
Sbjct: 143 LWWAGKELAMGKKLCDYIGVNDKTK 167
>05_02_0113 - 6748198-6748758
Length = 186
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 472 DELRGATKIVFPAGLPPHD---PVRMELDNVEDLSGTQAANEVIDP 600
DE G +V+ G PPHD PVR+ D V+ ++ T A P
Sbjct: 94 DEDDGFLDVVYNVGFPPHDPFRPVRVSRDQVKVITPTAAVTNAAAP 139
>06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231
Length = 539
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 508 LGRLFSLLLVAHPGPLLRLFGSCTSVDPHAS 416
+ R+ S L AHPGP + +CT +D H S
Sbjct: 131 VARMVSSALAAHPGPFRSVHITCTPMDAHRS 161
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 180 TYSGNLQPSIENRHN--VFYHIINGLFHLCLIEELTFISSFY 61
T NL S + +H FY+ +G H C I++L F + +Y
Sbjct: 91 TSEDNLNFSADGKHTQYTFYNYTSGYIHHCTIKKLEFDTKYY 132
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 298 PQGYVVAKDEMGRRCGLAPPTNLKEVLKKAAETAKDIISKKHVDLQKCM 444
P +V +K +GR CG+ P V A +D I+ V ++K +
Sbjct: 77 PYVFVPSKQALGRACGVTRPVIACSVTSNEASNLRDPINNLKVAIEKLL 125
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 619 ACGKKFISGNKLSDHLGKNDKT 684
ACGK+F S +KL H+ ++KT
Sbjct: 182 ACGKRFTSDSKLKSHVKGHEKT 203
>04_04_0818 + 28309950-28311344
Length = 464
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 421 HVDLQKCMTQKDVARALDELRGATKIVFPAGLPPHDPVRMELDNVEDLSGTQAA 582
H L+ MTQ+ + A + R + I+ AG+ + +E D ++DL+ T AA
Sbjct: 178 HAPLETYMTQEFLDYASERARASESILSGAGILANASRALEGDFIDDLAETLAA 231
>03_04_0240 + 19232391-19233098
Length = 235
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 328 MGRRCGLAPPTNLKEVLKKAAETAKDI 408
M R CGLAP L VL A T KD+
Sbjct: 114 MCRTCGLAPTAELFAVLFTACTTTKDV 140
>01_06_0230 +
27718840-27720188,27720983-27721174,27721488-27721569,
27721651-27721839,27721964-27722077,27722470-27722560,
27722632-27722789,27723401-27723826,27724355-27724727,
27725075-27725238
Length = 1045
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 156 KAEGYQNMS*NGRVSRSRNFPSFGDAGTNRRTDKRT*TGGSVGKSLRSSRIRGCQRRNG 332
+++ ++ +GR SR R F GDA RR D+R+ G+S R +G QR G
Sbjct: 114 RSKSLESTESDGRSSR-RRFTGDGDAPVVRRGDERS----GDGRSTSFDRQKGSQRNRG 167
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 16 Y*DI*IYYPKMVLFHVKRGDESQFLYQTE 102
Y +I Y+P+M+ +++ GD+S FLY E
Sbjct: 426 YREILEYHPQMMQKYLRGGDQSNFLYPRE 454
>12_02_0886 + 24014478-24014565,24014929-24015413
Length = 190
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 225 GDAGTNRRTDKRT*TGGSVGK--SLRSSRIRGCQRRNGSPLWSRPSNEP*GSSQESC*NC 398
GD G RR + GG G ++R+SR R +RR S +W +P G ++ SC C
Sbjct: 101 GDDGNVRRPPSSSSRGGGGGGGGTIRTSRSR--RRRRRSVVWEHMEVDPSG-NEASCRYC 157
>08_01_0941 -
9301603-9301788,9301866-9301958,9302060-9302120,
9302397-9302648,9302903-9303720,9303993-9304490
Length = 635
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 461 QGPW----MSYEEQRK*SSQLDFLHMTRYAWNWITLKIYPG 571
+GPW M Y + +K +DFL TR T+++ PG
Sbjct: 432 EGPWEMRRMQYMDAKKKKEPIDFLDPTRICQTQHTVRLAPG 472
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 166 PSAFH*KSPQCLLPHH*RAFP 104
P H KSP L PHH RA P
Sbjct: 72 PDGGHGKSPAALKPHHRRALP 92
>09_03_0049 + 11889214-11890302
Length = 362
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 376 LKKAAETAKDIISKKHVDLQKCMTQKDVARALDELRGATKIV 501
+ K +T +D + H D + +T + ARA D + GA ++V
Sbjct: 110 VSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVV 151
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 521 GGSPAGKTIFVAPRSSSR--ALATSFWVMHFCRSTCFLLIMSFAV 393
GG PA ++ + SS ALAT+ WV FL I+SFA+
Sbjct: 93 GGKPADVLLWRNKKISSSVLALATAIWVFFEWLDYHFLTIVSFAL 137
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 306 IRGCQRRNGSPLWSRPSNEP*GSSQESC*NCEG 404
+R C+ N PLW+ + P + SC C G
Sbjct: 325 LRYCREENAKPLWALSAGCPSNADIPSCSYCRG 357
>01_03_0230 -
14004159-14004344,14004422-14004514,14004613-14004673,
14004761-14004874,14004955-14005206,14005293-14007037
Length = 816
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 464 GPWMSYEEQRK*SSQLDFLHMTRYAWNWITLKIYPG 571
G WM Y + +K + FL TR T+++ PG
Sbjct: 580 GVWMQYMDAKKTKEPIGFLDPTRICQTQHTVRLAPG 615
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,189,432
Number of Sequences: 37544
Number of extensions: 432711
Number of successful extensions: 1301
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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