Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f04
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11064| Best HMM Match : U-box (HMM E-Value=5.2)                    224   5e-59
SB_18615| Best HMM Match : dTDP_sugar_isom (HMM E-Value=8.9)           30   2.2  
SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)                      29   2.9  
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         29   2.9  
SB_12624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)                29   2.9  
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_36541| Best HMM Match : WD40 (HMM E-Value=0)                        28   6.6  
SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 28   6.6  
SB_23636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      28   8.8  
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)                 28   8.8  
SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 28   8.8  

>SB_11064| Best HMM Match : U-box (HMM E-Value=5.2)
          Length = 257

 Score =  224 bits (548), Expect = 5e-59
 Identities = 105/220 (47%), Positives = 146/220 (66%), Gaps = 1/220 (0%)
 Frame = +1

Query: 46  MVLFHVKRGDESQFLYQTEVEKPVNDVVKDIVAIFNGRLKVTRICHEMEELADHGTFLPL 225
           MV  H+KRG+ES FLY+T     +++++ ++V I NGRLK+ R+ +E+EELA HG  LP 
Sbjct: 1   MVKLHIKRGEESLFLYETTCSVELSELIPELVRISNGRLKIERLNYEIEELAKHGPTLPP 60

Query: 226 EMQGLTEEQIKELKLEDPWANRCAPQG-YVVAKDEMGRRCGLAPPTNLKEVLKKAAETAK 402
            MQGLT++QI +L+L+D W ++C P G YV   D M RR G AP  N+ EVL +  + A 
Sbjct: 61  NMQGLTDDQISDLRLKDEWEDKCVPSGGYVETTDPMSRRNGRAPKDNMAEVLNRTRQEAM 120

Query: 403 DIISKKHVDLQKCMTQKDVARALDELRGATKIVFPAGLPPHDPVRMELDNVEDLSGTQAA 582
             +SK  V    C+T + V  ALD++RG+  IV+P GLPPHD + +E DN EDLSG Q +
Sbjct: 121 AAVSKNLVKTDICLTMEKVKDALDQMRGSVMIVYPMGLPPHDNITLEFDNQEDLSGMQGS 180

Query: 583 NEVIDPSRACLWACGKKFISGNKLSDHLGKNDKTKVTVKI 702
            +V+D   A LW  GK+   G KL D +GKN+KTK+ VK+
Sbjct: 181 LQVLDEGTAQLWWAGKELQRGKKLQDFIGKNEKTKLVVKL 220


>SB_18615| Best HMM Match : dTDP_sugar_isom (HMM E-Value=8.9)
          Length = 220

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 346 LAPPTNLKEVLKKAAETAKDIISKKHVD---LQKCMTQKDVA 462
           L+PP  LKE +K       D I  KH +   +++ ++QKDV+
Sbjct: 174 LSPPKELKEAMKSEGIPQSDFIIMKHGETQIIEESISQKDVS 215


>SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 103 VEKPVNDVVKDIVAIFNGRLKVTRICHEMEELAD 204
           +E  + DV KD+V   N R  + R CHE + + D
Sbjct: 87  IEHLLMDVAKDVVFRANNRFIIQRPCHESDAVID 120


>SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)
          Length = 235

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 535 RMELDNVEDLSGTQAANEVIDPSRACLWACGKKFISGNKLSDHLGKNDKTKVT-VKICTA 711
           R+ +D  + L+GT  A + + P+   +WAC +   +    S H G  D  K + ++I   
Sbjct: 167 RVAVDIPKRLTGTARAQQEVAPALCTVWACAQPSHAVRPTSSH-GAWDSIKFSQIEIAQG 225

Query: 712 SEG 720
            EG
Sbjct: 226 LEG 228


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -2

Query: 515  SPAGKTIFVAPRSSSRALATSFWVMHFCRSTCFLLI----MSFAVSAAFLRTSLRFVGGA 348
            +P+   I +A R+SS +L     V+H  RS+CF+L+     S+++   +L  S  F+   
Sbjct: 1090 TPSSCFILLARRASSYSLV----VLHLTRSSCFILLARRASSYSLVVLYLTPSSCFI--L 1143

Query: 347  RPQRRPISSLATTY 306
             P+R    SL   Y
Sbjct: 1144 LPRRASSYSLVVLY 1157


>SB_12624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 88  GIDFHLLFLRGIVPFLGNRFKYL 20
           G+ + LL +RG VPFLG +++ L
Sbjct: 101 GVQYRLLVVRGTVPFLGVQYRLL 123


>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
          Length = 406

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 541 ELDNVED-LSGTQAANEVIDPSRACLWACGKKF 636
           E+DN ED + G     +V+ PS+  + ACGK F
Sbjct: 242 EVDNDEDQMEGRPNPFKVLSPSKRSMGACGKSF 274


>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1174

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +1

Query: 187 MEELADHGTFLPLEMQGLTEEQIKELKLEDPWANRCAPQG----YVVAKDEMGRRCGLAP 354
           MEE  D  T   LE++ LTEE ++ L  ++        +G    Y+  KD++ R      
Sbjct: 686 MEEQQDALTERQLEIESLTEE-LRTLTDQNTSTYSLRREGTLSVYIEEKDQLQRELDALR 744

Query: 355 PTNLKEVLKKAAETAKDIISKKHVDLQKC 441
            T     + K   T+  +   +  +++KC
Sbjct: 745 KTEAGIEVSKVTTTSSQVEISRDYEIEKC 773


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +1

Query: 346  LAPPTNLKEVLKKAAETAKDIISKKHVDLQKCMTQKDVARALDELRGATKIVFPAGLPPH 525
            L PP N+KE LK+       ++ +    ++    Q+   + L++ R   ++ F A +  H
Sbjct: 859  LIPPANIKEKLKEDIHDPHKVLDRVKYRVEWVKHQEKEKQKLEDEREKERVAF-ASVDWH 917

Query: 526  DPVRMELDNVED 561
            D V +E    +D
Sbjct: 918  DFVVVETVEFKD 929


>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1070

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 184  EMEELADHGTFLPLEMQGLTEEQIKELKLEDPWA---NRCAPQGYVVAKDEM-GRRCGLA 351
            E E   D  T L +EM+  T  Q+K+LK++D  A    R  P+ Y + +DE+ G     +
Sbjct: 908  ENENKRDDITGL-IEMENQTVRQLKDLKVKDLKALAKERGIPRYYWMRRDELVGALTSTS 966

Query: 352  PP 357
            PP
Sbjct: 967  PP 968


>SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 398

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
 Frame = +1

Query: 115 VNDVVKDIVAIFNGRLKVTRICHEMEELADHGTFLPL----EMQGLTEEQIKELKLEDPW 282
           VN  VK + ++  G   V+ + H+         F  +    EM+  T  Q+K+LK++D  
Sbjct: 128 VNMTVKVVKSLMTGE-DVSELSHQTPNEILESWFKDITGLIEMENQTVRQLKDLKVKDLK 186

Query: 283 A---NRCAPQGYVVAKDEM-GRRCGLAPP 357
           A    R  P+ Y + +DE+ G     +PP
Sbjct: 187 ALAKERGIPRYYWMRRDELVGALTSTSPP 215


>SB_23636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 26/102 (25%), Positives = 39/102 (38%)
 Frame = +3

Query: 138 CGDFQWKAEGYQNMS*NGRVSRSRNFPSFGDAGTNRRTDKRT*TGGSVGKSLRSSRIRGC 317
           CG     A+   NM  + R  R  +     D  TN RTD+RT  G +   + R + +R  
Sbjct: 48  CGQTDKHADTQTNMRTHRRTCRHTD--EHADTQTNMRTDRRT-CGQTDEHADRQTNMRTD 104

Query: 318 QRRNGSPLWSRPSNEP*GSSQESC*NCEGHYQ*EACGSTEVH 443
           +R  G             + + +C   + H      G TE H
Sbjct: 105 RRTCGQTDEHADRQTNMWTDRRTCGQTDEHVDRRTYGQTEEH 146


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = +1

Query: 136  IVAIFNGRLKVTRICHEMEELADHGTFLPLEMQGLTEEQIKELKLEDPWANRCAPQGYVV 315
            ++A    RL+  ++C E+EE++    F     + +  E I E  +E     +CA + +  
Sbjct: 787  LIAEQESRLQQLKLCQELEEISAQEVF----QRVVESEDILEPPIEQSPRAKCATR-HTQ 841

Query: 316  AKDEMGRRCGLAPPTN-LKEVLKKAAETA 399
            A  +M    G +P +N +++ L   + T+
Sbjct: 842  AMRDMRLMFGTSPQSNGMRDSLATVSRTS 870


>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 223 LEMQGLTEEQIKELKLEDPWA---NRCAPQGYVVAKDEM-GRRCGLAPP 357
           +EM+  T  Q+K+LK++D  A    R  P+ Y + +DE+ G     +PP
Sbjct: 47  IEMENQTVRQLKDLKVKDLKALAKERGIPRYYWMRRDELVGALTNTSPP 95


>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
          Length = 856

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 223 LEMQGLTEEQIKELKLEDPWA---NRCAPQGYVVAKDEM-GRRCGLAPP 357
           +EM+  T  Q+K+LK++D  A    R  P+ Y + +DE+ G     +PP
Sbjct: 47  IEMENQTVRQLKDLKVKDLKALAKERGIPRYYWMRRDELVGALTNTSPP 95


>SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 708

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 223 LEMQGLTEEQIKELKLEDPWA---NRCAPQGYVVAKDEM-GRRCGLAPP 357
           +EM+  T  Q+K+LK++D  A    R  P+ Y + +DE+ G     +PP
Sbjct: 47  IEMENQTVRQLKDLKVKDLKALAKERGIPRYYWMRRDELVGALTSTSPP 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,668,766
Number of Sequences: 59808
Number of extensions: 475350
Number of successful extensions: 1211
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)