Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3f04
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    31   1.1  
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    28   5.8  
AF067608-11|AAC17656.2|  368|Caenorhabditis elegans Hypothetical...    28   5.8  
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    28   5.8  
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    28   5.8  
U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 484 GATKIVFPAGLPPHDPVRMELDNVEDLSGTQAANEVID 597
           G  KIV P G  P  P R +  +V+D   TQ A E I+
Sbjct: 117 GIAKIVAPEGWTPR-PTRKDFSDVDDYEITQPARETIE 153


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 449 WVMHFCRSTCFLLIMSFAVSAAFLR 375
           W+ +FCR     LI S A+S+A  R
Sbjct: 382 WIFNFCRELILFLISSIALSSACCR 406


>AF067608-11|AAC17656.2|  368|Caenorhabditis elegans Hypothetical
           protein B0511.11 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 367 KEVLKKAAETAKDIISKKHVDLQKCMTQKD 456
           KE+LK A    K  ++KKH  ++KC+T ++
Sbjct: 157 KEILKLAPRLLK--VAKKHAAIEKCLTPEE 184


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 449 WVMHFCRSTCFLLIMSFAVSAAFLR 375
           W+ +FCR     LI S A+S+A  R
Sbjct: 386 WIFNFCRELILFLISSIALSSACCR 410


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 449 WVMHFCRSTCFLLIMSFAVSAAFLR 375
           W+ +FCR     LI S A+S+A  R
Sbjct: 382 WIFNFCRELILFLISSIALSSACCR 406


>U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical
           protein F12A10.4 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 538 CVPGHVEEV-QLGRLFSLLLVAHPGPLL 458
           C  G  EE+ Q+GRL S++L   P PLL
Sbjct: 142 CAMGKTEEIHQVGRLSSIILPGLPFPLL 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,845,600
Number of Sequences: 27780
Number of extensions: 359863
Number of successful extensions: 947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)