Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e24
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...   191   7e-50
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    69   6e-13
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    56   6e-09
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    29   0.60 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    28   1.4  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   3.2  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   5.6  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    25   7.4  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    25   7.4  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score =  191 bits (466), Expect = 7e-50
 Identities = 92/141 (65%), Positives = 112/141 (79%), Gaps = 1/141 (0%)
 Frame = +3

Query: 246 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 425
           M+IR AR SDL  MQ+CNL  LPENYQ+KYY YH +SWP LSYVA D KG +VGYVLAKM
Sbjct: 1   MDIRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKM 60

Query: 426 EEDGEDN-RHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAAL 602
           EE+ +D   HGHITS++V RS+R LGLA++LM Q+  AMVE + AKY+SLHVRKSNRAA+
Sbjct: 61  EEEPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAAI 120

Query: 603 NLYTNSLGFKILEIEPKYYAD 665
           +LY ++L F +  IE KYYAD
Sbjct: 121 HLYRDTLQFDVQGIESKYYAD 141


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
 Frame = +3

Query: 264 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGH--IVGYVLAKMEEDG 437
           + +DL +  + NL  L E + + +Y  +   WP L  V E +     ++GY++ K E  G
Sbjct: 8   KATDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTG 67

Query: 438 EDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTN 617
           ++  H H+T++ V  + RRLGLA+ +M+     +     A +V L VR SN  A++ Y  
Sbjct: 68  KE-WHTHVTAITVAPNSRRLGLARTMMDYLE-TVGNSENAFFVDLFVRASNALAIDFY-K 124

Query: 618 SLGFKILEIEPKYYAD 665
            LG+ +      YY++
Sbjct: 125 GLGYSVYRRVIGYYSN 140


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 38/117 (32%), Positives = 57/117 (48%)
 Frame = +3

Query: 309 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 488
           L E Y    Y Y    WP+ S+VA D     +G V+ K +        G+I  LA+ + +
Sbjct: 23  LSEPYSKYVYRYFVHQWPEFSFVALDND-RFIGAVICKQDVHRGTTLRGYIAMLAIVKEY 81

Query: 489 RRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYY 659
           R  G+A KL  QASL +++   A+ + L     N AA++ Y   LGF   +   +YY
Sbjct: 82  RGQGIATKL-TQASLDVMKNRGAQEIVLETEVDNEAAMSFY-ERLGFCRYKRLYRYY 136


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +3

Query: 369 SYVAEDEKGHIVGY---VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLA-QKLMNQASLA 536
           ++V E  +  IVG         E+D +D+ HG          H R G+A Q++ N  S  
Sbjct: 558 AFVEEKNRYLIVGTSTSAFTSNEDDDDDDGHG----------HNRFGVAFQEVANMTSAT 607

Query: 537 M-VECFQAKYVSLHVRKSNRAALNLYTNSLGFKIL 638
           + ++CF+A  +     +  ++ L ++  SL FK L
Sbjct: 608 LQMDCFEASVI-----ECQKSDLGVFLESLSFKTL 637


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 174 TYHLVVLEQIEIWINSTSKQCTNFKI*LFGEVLKIKSLEYLL*PNFLKY 28
           T H +V  +  +W+ S S Q T   + +   VLK  S+E LL P   K+
Sbjct: 293 TLHDLVSTRCSVWLTSPSSQRTTKDLEVLNNVLK-DSIEPLLLPTVNKF 340


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 363 GAKKVHGRSNISSDSSLADTISC 295
           G K VHG  N++S  +++D + C
Sbjct: 577 GGKAVHGLVNLASSRNVSDRVKC 599


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 458 VTMTIILTVLFHFCQNISNNMS 393
           +  +I+LT+LF+F  N+S+ M+
Sbjct: 278 IPFSIVLTILFYFDHNVSSVMA 299


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 29  YFKKFGYSRYSRDLILRTSP 88
           YF++FGY+ Y   L+L  +P
Sbjct: 343 YFRRFGYNDYQLYLLLSCAP 362


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 446 IILTVLFHFCQNISNNMSFFIFSYITELGP 357
           ++LT L H    + +N + F+  Y+ +L P
Sbjct: 252 VVLTTLMHMAWALLDNPNLFVEPYVQQLMP 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,964
Number of Sequences: 5004
Number of extensions: 49745
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)