Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3e24
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 202 3e-52
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401... 80 2e-15
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130... 56 3e-08
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 46 3e-05
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 42 3e-04
06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812 37 0.013
04_04_0166 - 23250473-23250746,23251349-23252025 33 0.15
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 31 0.62
12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905 29 3.3
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 29 3.3
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 202 bits (492), Expect = 3e-52
Identities = 96/138 (69%), Positives = 111/138 (80%)
Frame = +3
Query: 252 IRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEE 431
IR A DL+ MQ CNL+CLPENYQMKYY YH LSWPQL +VAED G IVGYVLAKMEE
Sbjct: 4 IRQATIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEE 63
Query: 432 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 611
D + HGHITSLAV RSHR+LGLA KLM+ A AM + F A+YVSLHVR+SNRAA NLY
Sbjct: 64 DPSEPCHGHITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLY 123
Query: 612 TNSLGFKILEIEPKYYAD 665
T++LG++I ++E KYYAD
Sbjct: 124 TSTLGYQIHDVEAKYYAD 141
>03_05_0805 -
27839576-27839667,27839763-27839823,27840082-27840151,
27841167-27841299,27841928-27842018,27842097-27842174
Length = 174
Score = 79.8 bits (188), Expect = 2e-15
Identities = 43/130 (33%), Positives = 68/130 (52%)
Frame = +3
Query: 273 DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRH 452
DL+ NL L E + M +Y + WP + A ++GY++ K+E GE + H
Sbjct: 11 DLLRFSSVNLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKVEGQGE-SWH 69
Query: 453 GHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFK 632
GH+T+++V RR LA+KLMN + +A +V L VR SN A+ +Y LG+
Sbjct: 70 GHVTAVSVATEFRRQKLAKKLMNLLEEISDKMDKAYFVDLFVRASNMPAIRMY-EKLGYV 128
Query: 633 ILEIEPKYYA 662
+ +YY+
Sbjct: 129 VYRRVLRYYS 138
>11_05_0016 -
18410889-18411104,18411326-18411381,18412883-18413009,
18413113-18413307
Length = 197
Score = 56.0 bits (129), Expect = 3e-08
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Frame = +3
Query: 309 LPENYQMKYYFYHGLSWPQLSYVAEDEK-GHIVGYVLAKMEEDGEDNRHGHITSLAVKRS 485
L E Y + Y Y WPQL+++A D K G VG V+ KM E R G+I L V +
Sbjct: 43 LSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGAFR-GYIAMLVVLKP 101
Query: 486 HRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYY 659
+R G+A +L+ ++ M+E + V+L +N+ AL LY LGF + +YY
Sbjct: 102 YRGRGIATELVTRSIRVMMES-GCEEVTLEAEVTNKGALALY-GRLGFIRAKRLYRYY 157
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/132 (26%), Positives = 61/132 (46%)
Frame = +3
Query: 264 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGED 443
R ++M ++ N P Y KYY + ++ + S +A VG + ++E+
Sbjct: 30 RDKNVMQLKKLNTALFPVRYNEKYY-HDTIASKEFSKLAY-YSDICVGAIACRLEKKEGG 87
Query: 444 NRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSL 623
+I +L V +R LG+ KL+N + + E + LHV+ +N A+ Y
Sbjct: 88 AVCVYIMTLGVLAPYRSLGIGSKLLNHV-IDLCEKQNIPEIYLHVQTNNDDAIAFY-KKF 145
Query: 624 GFKILEIEPKYY 659
GF+I + KYY
Sbjct: 146 GFEITKTIEKYY 157
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 453 GHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 629
G+I L V SHRR+GLA +++ + A E A+Y + KSN A+L L+T G+
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRME-AWFERMGAEYAYMATDKSNEASLRLFTVRCGY 162
>06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812
Length = 419
Score = 37.1 bits (82), Expect = 0.013
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Frame = +3
Query: 372 YVAEDEKGHIVGYVLA---KMEEDGEDNRH----GHITSLAVKRSHRRLGLAQKLMNQAS 530
Y E+EK +VG + A + G+ + ++ L V SHRRLG+ L+ +A
Sbjct: 100 YGEEEEKKKVVGVIKACVKTVSRGGKQEKPFVKVANLLGLRVSPSHRRLGIGTALVRRAE 159
Query: 531 LAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 629
V A++ ++ +SN A+L L+T G+
Sbjct: 160 EWCV-ARGAEHATMATTESNAASLALFTGRFGY 191
>04_04_0166 - 23250473-23250746,23251349-23252025
Length = 316
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/64 (25%), Positives = 36/64 (56%)
Frame = +3
Query: 456 HITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKI 635
+I ++ VK S RR G+ ++L+ +++ ++V LH R ++ N+Y + G+ I
Sbjct: 214 YICNMTVKTSLRRRGIGKQLLKACEDLIIKMDAKRHVYLHCRIIDQVPFNMYRKA-GYNI 272
Query: 636 LEIE 647
++ +
Sbjct: 273 VQTD 276
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 459 ITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKIL 638
+ L V SHRRLG+A +L+ +A A Y ++ SN A+L L+ + +
Sbjct: 124 LLGLRVSPSHRRLGIATELVRRAE-EWCAARGAAYATMATTASNAASLALFQGRFKYALF 182
Query: 639 EIEPKY 656
+P++
Sbjct: 183 R-KPRF 187
>12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905
Length = 356
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 432 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 611
DG+ G++ L V HRR G+ KL+ A A++V +N A+ L+
Sbjct: 86 DGDTVLAGYVLGLRVSPVHRRKGIGLKLVESVE-AWAARHGARHVVAAADAANAASRGLF 144
Query: 612 TNSLGF 629
G+
Sbjct: 145 VGRRGY 150
>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 462 TSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLH-VRKSNRAALN 605
T + VKRS+ RLG+ ++ N+ S+ M+E S++ + K + LN
Sbjct: 854 TYVQVKRSNGRLGVYKEFSNEVSMLMLEADPQNATSIYNLHKDAKDKLN 902
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,301
Number of Sequences: 37544
Number of extensions: 297136
Number of successful extensions: 656
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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