Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e24
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)        53   2e-07
SB_49056| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-06)        51   1e-06
SB_20020| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_16857| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)                 29   4.5  

>SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)
          Length = 259

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 37/107 (34%), Positives = 54/107 (50%)
 Frame = +3

Query: 309 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 488
           L E Y +  Y Y   +WP L ++A   K   VG ++ K++        G+I  LAV++  
Sbjct: 132 LSEPYSIYTYRYFIHNWPNLCFLAM-YKDQCVGAIVCKLDVHKSMVHRGYIAMLAVEKDF 190

Query: 489 RRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 629
           RR  +   L+ +A  AM+E      V L    +N+AAL LY N LGF
Sbjct: 191 RRHKIGTALVKKAIRAMIE-DNCDEVVLETEITNKAALRLYEN-LGF 235


>SB_49056| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-06)
          Length = 118

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%)
 Frame = +3

Query: 432 DGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 611
           + ++  HGH+T+++V    RRLGLA KLM+     + E  +  +V L VR SN+ A+ +Y
Sbjct: 8   EAQEQWHGHVTAVSVAPEFRRLGLAAKLMSSLE-NISEIKEGFFVDLFVRVSNKVAVAMY 66

Query: 612 TNSLGFKILEIEPKYYA 662
              LG+ +     +YY+
Sbjct: 67  -KQLGYVVYRTVLEYYS 82


>SB_20020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 108 WYIVWKCCLSKFRFVRELLGG 170
           W++VWK  L +F F+REL+ G
Sbjct: 17  WFVVWKMFLVRFSFIRELVYG 37


>SB_16857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 108 WYIVWKCCLSKFRFVRELLGG 170
           W++VWK  L +F F+REL+ G
Sbjct: 17  WFVVWKMFLVRFSFIRELVYG 37


>SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 312 PENYQMKYYFYHGLSWPQLSYV 377
           P NY   YY+Y+   +P LSY+
Sbjct: 41  PHNYAYYYYYYYYYYYPALSYI 62


>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
          Length = 1492

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 396 HIVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLH 575
           H++ Y L +M+E GE+N  G  T L      R LG       + ++  +E   + +V+ H
Sbjct: 77  HVLFYPLNRMDERGENN--GRCTRLLT----RELGFRASTFQKQAILRLEAHDSVFVAAH 130

Query: 576 VRKSNRA 596
                 A
Sbjct: 131 TSAGKTA 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,648
Number of Sequences: 59808
Number of extensions: 366605
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)