Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3e24
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical... 233 8e-62
AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical ... 80 1e-15
AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical... 58 6e-09
Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical pr... 31 0.56
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 29 3.0
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 29 3.0
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81081-4|CAB03092.2| 491|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL023825-1|CAA19442.2| 491|Caenorhabditis elegans Hypothetical ... 28 6.8
AF052060-1|AAC06226.1| 491|Caenorhabditis elegans Olf-1/EBF tra... 28 6.8
Z92812-6|CAB07280.1| 372|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical
protein K07H8.3 protein.
Length = 182
Score = 233 bits (570), Expect = 8e-62
Identities = 106/140 (75%), Positives = 122/140 (87%)
Frame = +3
Query: 246 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 425
MNIRCAR DLM+MQ+ NL+CLPENYQMKYYFYH LSWPQLSY+AED KG++VGYVLAKM
Sbjct: 1 MNIRCARVDDLMSMQNANLMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKM 60
Query: 426 EEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALN 605
EED + HGHITSLAVKRS+RRLGLA K+M+Q + AMVE + AKYVSLHVR SNRAALN
Sbjct: 61 EEDPGEEPHGHITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALN 120
Query: 606 LYTNSLGFKILEIEPKYYAD 665
LY N+L F+I++ EPKYYAD
Sbjct: 121 LYKNTLKFEIVDTEPKYYAD 140
>AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical
protein Y97E10AL.3 protein.
Length = 173
Score = 80.2 bits (189), Expect = 1e-15
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Frame = +3
Query: 264 RPSDLMNM---QHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEED 434
RP D+M+M + NL E Y ++Y ++ +++P+ VAE G I+ YV+ K+E
Sbjct: 5 RPFDVMDMFKFNNVNLDINTETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGKIE-- 62
Query: 435 GED-NRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 611
G D N HGH+T+L+V + RRLGLA +M E +A +V L VR SN+ A+ LY
Sbjct: 63 GRDTNWHGHVTALSVAPNFRRLGLAAYMMEFLERTS-EARRAYFVDLFVRVSNKIAIELY 121
Query: 612 TNSLGFKILEIEPKYY 659
LG+ + YY
Sbjct: 122 -KKLGYVVYRQIIGYY 136
>AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical
protein B0238.10 protein.
Length = 278
Score = 58.0 bits (134), Expect = 6e-09
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +3
Query: 309 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHI-VGYVLAKMEEDGEDNRHGHITSLAVKRS 485
L E Y + Y Y +WP+ ++A D+ + +G VL K+E D G++ LAV S
Sbjct: 117 LSEPYSIYTYRYFLHNWPEYCFLAYDQTNNTYIGAVLCKLELDMYGRCKGYLAMLAVDES 176
Query: 486 HRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYY 659
RRLG+ +L+ +A AM + + L SN+ A LY+N LGF + KYY
Sbjct: 177 CRRLGIGTRLVRRALDAM-QSKGCDEIVLETEVSNKNAQRLYSN-LGFIRQKRLLKYY 232
>Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical
protein F30F8.10b protein.
Length = 215
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +3
Query: 444 NRH-GHITSLAVKRSHRRLGLAQKLMNQASLAMVE-CFQAKYVSLHVRKSNRAALNLYTN 617
N H +I S+AV + RRLGLA +L+N ++ + + V LHV +N AAL+ Y
Sbjct: 94 NAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY-K 152
Query: 618 SLGFKILEIEPKYY 659
GF+ P+YY
Sbjct: 153 MHGFEFHASLPEYY 166
>Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical
protein F30F8.10a protein.
Length = 242
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +3
Query: 444 NRH-GHITSLAVKRSHRRLGLAQKLMNQASLAMVE-CFQAKYVSLHVRKSNRAALNLYTN 617
N H +I S+AV + RRLGLA +L+N ++ + + V LHV +N AAL+ Y
Sbjct: 121 NAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY-K 179
Query: 618 SLGFKILEIEPKYY 659
GF+ P+YY
Sbjct: 180 MHGFEFHASLPEYY 193
>U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical
protein F54E7.9 protein.
Length = 167
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +3
Query: 411 VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSN 590
++A E+ E R +I S V HR GL LM+ + + + LHV+ SN
Sbjct: 71 IVAVKPENFETGRVLYIRSFGVHPRHREAGLGSFLMDFVD-EKGKLLKLPHAMLHVQTSN 129
Query: 591 RAALNLYTNSLGFKILEIEPKYY 659
+ A+ Y N GF + + P+YY
Sbjct: 130 KTAIEFYKNR-GFNVDCLVPQYY 151
>U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical
protein C29F5.2 protein.
Length = 252
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 276 LMNMQHCNLLCLPENYQMKYYFYHGLS 356
++++QHC L C NY +Y + GLS
Sbjct: 119 IVDLQHCTLPCKSINYNFHFYSFKGLS 145
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 393 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 518
GH IV Y+L K + NRHGH T L + ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 393 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 518
GH IV Y+L K + NRHGH T L + ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
protein F40H6.5 protein.
Length = 1288
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 297 NLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLA 473
NL+ + E Y+ +YY G + L + G+IVGY + ++ ++ +GH+ S A
Sbjct: 432 NLVPIRELYKDRYYVVAGNDYQYLIDDGYNITGNIVGYTV-DCKDSKDEFVYGHLPSYA 489
>Z81081-4|CAB03092.2| 491|Caenorhabditis elegans Hypothetical
protein Y16B4A.1 protein.
Length = 491
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 312 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 455
P N + +F+ ++ + + S E E+ G+V + E DG+D R+G
Sbjct: 62 PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110
>AL023825-1|CAA19442.2| 491|Caenorhabditis elegans Hypothetical
protein Y16B4A.1 protein.
Length = 491
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 312 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 455
P N + +F+ ++ + + S E E+ G+V + E DG+D R+G
Sbjct: 62 PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110
>AF052060-1|AAC06226.1| 491|Caenorhabditis elegans Olf-1/EBF
transcription factor protein.
Length = 491
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 312 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 455
P N + +F+ ++ + + S E E+ G+V + E DG+D R+G
Sbjct: 62 PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110
>Z92812-6|CAB07280.1| 372|Caenorhabditis elegans Hypothetical
protein T03E6.6 protein.
Length = 372
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 159 VLEQIEIWINSTSKQC-TNFKI*LFGEVL 76
+L+Q E W NST +C T F I L EV+
Sbjct: 109 ILQQNECWQNSTYLKCLTTFTINLIAEVI 137
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 309 LPENYQMKYYFYHGLSWPQLSYV 377
LP Y YYF+H +PQL+ V
Sbjct: 2105 LPAAYVRDYYFFHRSFYPQLTLV 2127
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 309 LPENYQMKYYFYHGLSWPQLSYV 377
LP Y YYF+H +PQL+ V
Sbjct: 2114 LPAAYVRDYYFFHRSFYPQLTLV 2136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,409,876
Number of Sequences: 27780
Number of extensions: 278918
Number of successful extensions: 697
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -