Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e21
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...   107   2e-24
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    77   3e-15
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    30   0.37 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    29   0.85 
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   2.0  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    27   3.4  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   4.5  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score =  107 bits (256), Expect = 2e-24
 Identities = 47/105 (44%), Positives = 68/105 (64%)
 Frame = +1

Query: 385 IYSDKNSRXXXXXXXXXXSFAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVS 564
           + +DK SR          S+ FV++ YG+WTNSLGLISDA HM FDC  ++ GL A+ ++
Sbjct: 341 VLADKESRSIFYFFLLNVSYMFVQVIYGLWTNSLGLISDAIHMAFDCIAILVGLVATTLA 400

Query: 565 KWRSNERFSYGYARAEVLAGFVNGLFLLFIAFFIMSEAVERAIEP 699
           K   N  + +G+A+ E L+GF NG+FL+ I+F I+ EA+ R   P
Sbjct: 401 KMPLNYAYPFGFAKIEALSGFTNGIFLVLISFSIVGEALYRLFHP 445


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
 Frame = +1

Query: 439 SFAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNE-RFSYGYARAEV 615
           +F F+E+  G   +SL LI+D+FHM  D   L+  L A+ ++   S+E +++YG+ RAE+
Sbjct: 19  TFFFIEIITGYAIDSLALIADSFHMLNDIVSLLVALWATRLAHSTSHEPKYTYGWQRAEI 78

Query: 616 LAGFVNGLFLLFIAFFIMSEAVERAIEP 699
           L    NG+FL+ +  FI  EA+ER IEP
Sbjct: 79  LGALSNGVFLIALCMFIFMEAIERFIEP 106


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 568 WRSN-ERFSYGYARAEVLAGFVNGLFLLFIAFFIMSEAVERAIE 696
           WR    R+ +G  + E+L  F   + L+F+   ++ E  E AIE
Sbjct: 149 WRHTCLRYPFGMQQMELLVDFSFSILLIFLGMNLLKEPAEHAIE 192


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 336 TGRPCILLYKW*HSIFNTAYCLVTNLTSFHIDSFKNHKN*KIHTVYV 196
           TG PC++ Y W  S FN +  +     SF I  F+N      H +YV
Sbjct: 24  TGFPCLMYYLWACSKFNDSQFIKPE--SFTIAGFQNFFRTLGHYIYV 68


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 592 YGYARAEVLAGFVNGLFLLFIAFFIMS 672
           Y Y +  +L GF+  LFL+++ F I+S
Sbjct: 298 YPYLKLTLLVGFLFRLFLVYLLFLIIS 324


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 259 EVCDETIGSIEDTMLPLIQKDTRPSR--GPISG-IKEKFQN 372
           EV DET+  +E  +   +Q +T+P+   G + G +KE+ +N
Sbjct: 271 EVIDETVNDLESAVSKGLQIETQPASHDGEVDGEVKEEEEN 311


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 572 LHFDTSEAANPATRPVQSKNIWNASDIRP 486
           + FDT E     T P+ SK +  +SD++P
Sbjct: 346 IKFDTPEKKFTFTNPLSSKKLPASSDVKP 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,902
Number of Sequences: 5004
Number of extensions: 53362
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)