Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e19
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076...    29   4.1  
07_03_0871 - 22183149-22183232,22183706-22183964,22184012-221840...    28   9.6  
06_03_1012 - 26893828-26894052,26894137-26894355,26894513-268946...    28   9.6  

>12_02_0781 +
           23105554-23106855,23107191-23107511,23107581-23107667,
           23107907-23108302,23108327-23108500,23108600-23108764,
           23108857-23109151,23109319-23109446,23109681-23109986,
           23110531-23110591,23110676-23110915,23111251-23111372
          Length = 1198

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 382 HLTNFIHSFKLIIKLNSLTITHAAHYVQISATEQHSQSSVF*YLIIIQF 236
           H   F+H+F  ++ ++   I HAA Y ++  + +  Q+ V  +  I+ F
Sbjct: 558 HQVEFLHAFDSVLLMSQGQIMHAASYQELLLSSREFQNLVNAHKDIVNF 606


>07_03_0871 -
           22183149-22183232,22183706-22183964,22184012-22184091,
           22184308-22184667,22184757-22184900,22184986-22185141,
           22185236-22185401,22185480-22185512,22186188-22186270,
           22186341-22186443,22186540-22186628
          Length = 518

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 611 YHSFVLVSETEMLWYNVKINVTLRNISGKCYFLILLTS 724
           Y  FVL +     ++  K+N  LRN++G  Y L  L+S
Sbjct: 170 YQPFVLRTTAIFTYHEAKVNTRLRNLAG--YTLFFLSS 205


>06_03_1012 -
           26893828-26894052,26894137-26894355,26894513-26894652,
           26894790-26895198
          Length = 330

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -3

Query: 580 AINSHAVFAHLHSVTKYLINVHLRIRSSLQ*INDPQSALTSER 452
           A+ +H V+AH  + ++ L+  HL +R  L+ +  PQ   ++++
Sbjct: 178 AVTAHTVYAHKETCSEELLVEHL-VRKGLEQVVIPQGGASNQK 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,188,940
Number of Sequences: 37544
Number of extensions: 278790
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)