Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e10
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   2.5  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    25   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   7.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    24   7.6  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    24   7.6  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    24   7.6  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 268 YFIFQIIFHCYSFWL 224
           YFI  +IF  YSFW+
Sbjct: 492 YFISALIFTSYSFWI 506


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 99  RTLETSGNRMAWGYNGRVIGSPEHYAWGVKAF 194
           +TL   G+   +GY   +   P HY + +  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 160  LPITLPLYPQAMRLPEVSSVLDS 92
            LP+  P  PQ +  P VS+V  S
Sbjct: 1179 LPVPAPAAPQTLNPPSVSTVQQS 1201


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 188 LNTPSVMFGTSDHSTIVSPGHAVTRGFKRPR 96
           LN P ++FGTS  + I    +   RG  RPR
Sbjct: 318 LNKPKILFGTSTENKI--DENRPKRGRGRPR 346


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 263 YFPNNISLLLILVGFREYLKYNLKCLNTPSVMFGTSDHSTIVSPGH 126
           + P N  +  +  G  +Y K    C+  P  + G  DHS     GH
Sbjct: 363 FTPKNRYMKALESGCIDYFKRGGNCVEGPIRLLGGLDHSPSHLIGH 408


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 105 LETSGNRMAWGYNGRVIGSPE 167
           L TSG ++ WG   ++  +PE
Sbjct: 229 LVTSGGKVVWGKYAQITNNPE 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,252,825
Number of Sequences: 5004
Number of extensions: 23339
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)