Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e10
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    30   0.42 
07_01_0622 - 4625246-4627759                                           27   3.0  
03_06_0275 + 32806682-32807197,32808118-32808198,32808293-328085...    26   6.9  
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375...    26   9.1  

>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 284 EYQKSVFYFPNNISLLLILVGFREYLKYNLKCLNTPSVMFGTSDHSTIV 138
           E + S +    N+   L+ VG RE+   +L    TP V   TSDH  I+
Sbjct: 338 EQRMSDYMLAENVPANLLCVGHREFPSDSLPVQETPLVSRKTSDHVDIL 386


>07_01_0622 - 4625246-4627759
          Length = 837

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 157 PITLPLYPQAMRLPEVSSVLDSVKALLY 74
           P+TLPLYPQ+M   + S+  D  +A L+
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACLH 423


>03_06_0275 +
           32806682-32807197,32808118-32808198,32808293-32808568,
           32808670-32809182
          Length = 461

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 18  YLQPAKYDKDNLFYIYNRE 74
           +LQP+ YD D +FY+   E
Sbjct: 97  FLQPSHYDADEVFYVKEGE 115


>01_07_0288 +
           42534552-42534558,42535302-42537280,42537367-42537513,
           42537982-42538526,42538906-42538981,42539357-42539437
          Length = 944

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -1

Query: 263 YFPNNISLLLILV----GFREYLKYNLKCLNTPSVMFGTSDHSTIVSPGH 126
           +FPN   L   +     G  +    ++  LNTPS+  G S H+  +S  H
Sbjct: 735 HFPNGTELHAAIYSSTNGIHQLQNESISALNTPSLNTGRSLHANGISSQH 784


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,932
Number of Sequences: 37544
Number of extensions: 140406
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)