Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e10
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    27   3.6  
Z69793-3|CAA93672.2|  709|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z68336-3|CAA92735.1|  710|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 69  REYSKALTLSRTLETSGNRMAWGYNGRVIGSPEHYAWGVK 188
           R+YS+ + L R  +T G R +W        SP+H+ +GVK
Sbjct: 18  RDYSRQVQLERQADTEGRRSSW--------SPKHW-FGVK 48


>Z69793-3|CAA93672.2|  709|Caenorhabditis elegans Hypothetical
           protein R03A10.3 protein.
          Length = 709

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 93  VSKPCCIHGCRCRTNCLCRI 34
           V K C I G   RT C C I
Sbjct: 350 VEKMCAIFGIELRTGCFCNI 369


>Z68336-3|CAA92735.1|  710|Caenorhabditis elegans Hypothetical
           protein F22B3.4 protein.
          Length = 710

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 236 LILVGFREYLKYNLKCLNTPSVMFGTSDHSTI 141
           ++L G +EYL    +C     V  GTS HS I
Sbjct: 379 VVLGGLKEYLPAIKRCRRLIMVACGTSYHSAI 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,837,074
Number of Sequences: 27780
Number of extensions: 130514
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)