Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e10
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   2.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 51  NCLCRI*RAAGTTGL 7
           NCL +I +A G TGL
Sbjct: 161 NCLTKIFKADGITGL 175


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 51  NCLCRI*RAAGTTGL 7
           NCL +I +A G TGL
Sbjct: 161 NCLTKIFKADGITGL 175


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 183 HPKRNVRDFRSLYHCIPRPCG 121
           H KR + D    Y+ + RP G
Sbjct: 23  HEKRLLNDLLDTYNVLERPVG 43


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 87  LTLSRTLETSGNRMAWGYNG 146
           L L +TL+   NR++  YNG
Sbjct: 453 LALLKTLDLGENRISNFYNG 472


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 75  IHGCRCRT 52
           IHG RCRT
Sbjct: 204 IHGYRCRT 211



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 103 RLKPRVTAWPGDTM 144
           RL P+VTA  G+T+
Sbjct: 523 RLIPKVTAVAGETL 536


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 75  IHGCRCRT 52
           IHG RCRT
Sbjct: 204 IHGYRCRT 211



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 103 RLKPRVTAWPGDTM 144
           RL P+VTA  G+T+
Sbjct: 523 RLIPKVTAVAGETL 536


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 124 AWPGDTMVE*SEVP 165
           AWPGD+ +    +P
Sbjct: 919 AWPGDSDIRQRPIP 932


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,270
Number of Sequences: 438
Number of extensions: 1900
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)