Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e06
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   2.7  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.8  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   4.8  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   4.8  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    24   6.3  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    24   8.3  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    24   8.3  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -2

Query: 333 KIREALTSLDTPVTFKWVPSHRG---IKGNEIVDGIVNSN 223
           +I E  TSL T VT  W PS      +K N++ +  +  N
Sbjct: 214 QIEETFTSLSTFVTNNWSPSEYEDVMVKSNKVYETTLKRN 253


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 137 SHNLRLLCFRSKRKSVKG-TLHE 202
           +HN  L CFRS   S++G  +HE
Sbjct: 127 AHNFLLQCFRSNVSSLRGQKVHE 149


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 255 NEIVDGIVNSNYDEDHTNSCRVPFTDFL 172
           NE  +    SN   +H +S R P  DF+
Sbjct: 480 NESFNAASQSNLSSEHGHSSRTPMDDFV 507


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 75  VLFGFLHTNCLYALSIISNSFPIICDFF 158
           ++  F+   C+Y  S+   S P +C+ F
Sbjct: 43  IIISFMTMLCMYGSSVFMPSIPELCEKF 70


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -2

Query: 240 GIVNS-NYDEDHT---NSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHKGSWYAEIQKEL 73
           G  NS N DE+ +   +S  +P T+   D++       E  +   +K KG  Y +   EL
Sbjct: 121 GYYNSRNNDEEGSELADSQMLPMTESFADIEDIHHHQHEDEFSSSNKDKGFTYEKPVTEL 180

Query: 72  PSK 64
           P K
Sbjct: 181 PPK 183


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  SFIFIIPWLTWKFFLDFCIPTAFML 114
           S +F +PW+T   FL   + TAF L
Sbjct: 222 SKLFEMPWVTRFVFLYMYLATAFFL 246


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 58  PWLTWKFFLDFCIPTAFML 114
           PW T+KF L++ I TAF L
Sbjct: 171 PW-TYKFSLNYLIYTAFAL 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,489
Number of Sequences: 5004
Number of extensions: 29153
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)