Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e06
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.65 
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_59610| Best HMM Match : RnaseH (HMM E-Value=4.4e-19)                27   6.0  
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_20080| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)                    26   8.0  
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 147  KLWESYWKLCSKHKGSW 97
            KLWE +W  C+K  G W
Sbjct: 2305 KLWEEHWLSCAKELGQW 2321


>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = -2

Query: 255 NEIVDGIVNSNYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHKGSWYAEIQKE 76
           N   +G V  N    ++ +C+  FT    + + RS K  ++  +   + +G+     QKE
Sbjct: 506 NPCKNGGVCKNEHGGYSCACKAGFTGKNCEQECRSYKKLDTADRAAGRPRGNVLKCDQKE 565

Query: 75  LPSKPWYDKYKGA 37
           + +K WY +++GA
Sbjct: 566 ILTKAWY-RFEGA 577


>SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 162 KQRSRKLWESYWKLCSKHKGSWYAEIQKELPSKPWYDKYKGAK 34
           K++SRK W+S  +   K K     + QK L  +    K KG K
Sbjct: 275 KEKSRKQWKSRIEHTQKQKEDRQKQRQKNLKERSLSKKGKGMK 317


>SB_59610| Best HMM Match : RnaseH (HMM E-Value=4.4e-19)
          Length = 191

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 324 EALTSLDTPVTFKW--VPSHRGIKGNEIVDGIVNSNYDE 214
           + L  L + +   W  V  H GI+GNEI D +     D+
Sbjct: 150 QKLDKLCSEIDVHWTHVAGHAGIEGNEIADQLAKGGADK 188


>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = -2

Query: 282 VPSHRGIK-GNEIVDGIVNSNYDEDHTNSCRVPFTDFLFDLKQRSRKLW-ESYWKLCSKH 109
           VPS+   + GNE  DG   ++Y    TN  +  +     D  + S  L  E  + +C  H
Sbjct: 300 VPSNTPSRHGNECADGKATTSYSHSVTNLLKNIYEALCSDSSRASALLMSERRFTVCVFH 359

Query: 108 KG----SWYAEIQKE 76
                 SWY  + K+
Sbjct: 360 SESAPVSWYTRLLKQ 374


>SB_20080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 36  WLLYIYHTMAYLEVLFGFLHTNCLYA 113
           +++++Y  + Y E  +GF++T+ L A
Sbjct: 2   FVMFLYRALKYFEYYYGFVNTSVLIA 27


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 99   WYAEIQKELPSKPWYDKYKGAKERKFIIIIN 7
            W   IQK+    P  ++Y G ++R F+  IN
Sbjct: 1027 WRTAIQKKTHPFPVNEQYHGEEDRTFVATIN 1057


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 219 DEDHTNSCRVPFTDFLFDLKQRSRKLWESYWKLCSKHKGSWY 94
           + D T S R+P +  L+D +  +R++W+ +  L    +G+ Y
Sbjct: 237 NHDDTVSGRIPGS-VLYDAEMETREVWKRFGSLNFTKRGAMY 277


>SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)
          Length = 950

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 159 QRSRKLWESYWKLCSKHKGSWYAEIQKELP 70
           QR R+   S WK C KHK   + E +K  P
Sbjct: 4   QRKRRRSSSPWKKCPKHK-KLHQETKKHEP 32


>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 36  WLLYIYHTMAYLEVLFGFLHTNCLYALSII 125
           WL Y Y+  A L +LF F  TN  Y L I+
Sbjct: 292 WLAYPYNPPAALNILFDF-KTNEKYDLKIL 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,490,138
Number of Sequences: 59808
Number of extensions: 187791
Number of successful extensions: 474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)