Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3e06
(364 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64845-5|AAC48027.1| 581|Caenorhabditis elegans Hypothetical pr... 28 2.3
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 28 2.3
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 27 4.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 4.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 4.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 4.0
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 27 4.0
Z70682-1|CAA94584.1| 363|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 27 5.3
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 27 5.3
Z36948-3|CAA85412.1| 421|Caenorhabditis elegans Hypothetical pr... 26 7.0
AC006708-19|AAF60423.3| 588|Caenorhabditis elegans Mtm (myotubu... 26 7.0
U21324-5|AAN63436.1| 486|Caenorhabditis elegans Hypothetical pr... 26 9.3
U21324-4|AAN63435.1| 537|Caenorhabditis elegans Hypothetical pr... 26 9.3
>U64845-5|AAC48027.1| 581|Caenorhabditis elegans Hypothetical
protein F45F2.6 protein.
Length = 581
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 42 LYIYHTMAYLEVLFGFLHTNCLYALSIISNSFPII 146
L+IYHT +E FGF H ++++ S P++
Sbjct: 508 LFIYHTFETIESNFGFPHKMSSVYSALLNISSPLV 542
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 39 LLYI--YHTMAYLEVLFGFLHTNCLYALSIISNSFPIICDFF 158
++YI H L + GFLH L L +SNS IC+ F
Sbjct: 922 MIYICTQHIADALNQIVGFLHLKSLQNLYTMSNSSDEICNLF 963
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
(imitation swi) homologprotein 1 protein.
Length = 1009
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 194 EFLLRTFFLT*NKEVANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMINIKEP 36
+F R F +KE+ +Y K IG A+ K V ++++K +IN P
Sbjct: 730 QFYPRRLFELLDKEIYHYRKTIGYVAERPKDVPPKEAEKRQAEEQKLINNARP 782
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 306 DTPVTFKWVPSHRG 265
DT TFKW+P H G
Sbjct: 8941 DTSATFKWLPPHTG 8954
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 306 DTPVTFKWVPSHRG 265
DT TFKW+P H G
Sbjct: 8961 DTSATFKWLPPHTG 8974
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 306 DTPVTFKWVPSHRG 265
DT TFKW+P H G
Sbjct: 8961 DTSATFKWLPPHTG 8974
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +1
Query: 31 FLGSFIFIIPW--LTWKFFLD 87
FLG F+FIIPW FFLD
Sbjct: 76 FLGIFLFIIPWCFCCVPFFLD 96
>Z70682-1|CAA94584.1| 363|Caenorhabditis elegans Hypothetical
protein F08G5.2 protein.
Length = 363
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 180 DFLFDLKQRSRKLWESYWKLCSKHKGSWYAEIQKEL 73
+FLFD Q+ KL ESY+K S S A+ ++
Sbjct: 303 NFLFDRYQKKDKLLESYYKTGSFSSESKEAQFPSDM 338
>Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical
protein C47D12.2 protein.
Length = 689
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Frame = +3
Query: 87 FLHTNCLYALSIIS----NSFPIIC 149
+LHTNCL AL+ +S N PI+C
Sbjct: 481 YLHTNCLAALANMSAFFKNLAPIVC 505
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 128 GNYAQSIKAVGMQKSKKNFQVSHGMINIKEPRNVN 24
G Q A+ + + K+F S+G++N KE + +N
Sbjct: 34 GGNQQQAAAMDQEDASKDFYGSYGLVNSKEKKVLN 68
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 182 RTFFLT*NKEVANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMINIKE 39
R F + +E A G GN Q+ + +GM K ++ S M I++
Sbjct: 156 RNFVIQKKEESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMAGIRK 203
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 182 RTFFLT*NKEVANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMINIKE 39
R F + +E A G GN Q+ + +GM K ++ S M I++
Sbjct: 156 RNFVIQKKEESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMAGIRK 203
>Z36948-3|CAA85412.1| 421|Caenorhabditis elegans Hypothetical
protein D2089.5 protein.
Length = 421
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 171 FDLKQRSRKLWESYWKLCSKHKGSWYAEIQKELPSK 64
FD++Q +RKLW C K + W + + E PS+
Sbjct: 71 FDVEQNARKLWIDEDANCLKIE--WESGVLSEFPSE 104
>AC006708-19|AAF60423.3| 588|Caenorhabditis elegans Mtm
(myotubularin) family protein 1 protein.
Length = 588
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 7 INNDYKFTFLGSFIFIIPWLTWK 75
IN DYKF+ F+IP ++W+
Sbjct: 190 INKDYKFSETYPRTFVIPTVSWE 212
>U21324-5|AAN63436.1| 486|Caenorhabditis elegans Hypothetical
protein C35D10.7b protein.
Length = 486
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 164 RSKRKSVKGTLHELVXXXXXLELTIPSTISFPLIPL*E 277
R KRKSV+ HE L++ + S I+ L P+ E
Sbjct: 66 RRKRKSVENMCHEREHHGDHLQMQVASVIASNLGPMVE 103
>U21324-4|AAN63435.1| 537|Caenorhabditis elegans Hypothetical
protein C35D10.7a protein.
Length = 537
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 164 RSKRKSVKGTLHELVXXXXXLELTIPSTISFPLIPL*E 277
R KRKSV+ HE L++ + S I+ L P+ E
Sbjct: 117 RRKRKSVENMCHEREHHGDHLQMQVASVIASNLGPMVE 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,550
Number of Sequences: 27780
Number of extensions: 153139
Number of successful extensions: 469
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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