Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e06
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   1.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   1.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   2.6  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   7.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = -2

Query: 267 GIKGNEIVDGIVNS---NYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYW 127
           G K NE+   +V+    N    + N  RV       D K  S + W SYW
Sbjct: 291 GEKANEVATILVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQWNSYW 340


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = -2

Query: 267 GIKGNEIVDGIVNS---NYDEDHTNSCRVPFTDFLFDLKQRSRKLWESYW 127
           G K NE+   +V+    N    + N  RV       D K  S + W SYW
Sbjct: 291 GEKANEVATILVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQWNSYW 340


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 288 KWVPSHRGIKGNEIVDGIVNSNYDEDHTNSCR 193
           K + ++   K N   +   N+NY+ ++ N+C+
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCK 352


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 252 EIVDGIVNSNYDEDHTNSC 196
           E+VDG+    + +DH   C
Sbjct: 49  ELVDGMRRGEFPDDHDLQC 67


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 152 VANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMI 51
           V  Y  A+  Y Q +KA+        F  SH ++
Sbjct: 447 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVV 480


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 152 VANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMI 51
           V  Y  A+  Y Q +KA+        F  SH ++
Sbjct: 362 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVV 395


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 152 VANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMI 51
           V  Y  A+  Y Q +KA+        F  SH ++
Sbjct: 681 VEGYPHAVPKYIQRLKAIRATLKASPFFASHEVV 714


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 284 HLNVTGVSKDVNASL 328
           HL + GVSK +   L
Sbjct: 34  HLQILGVSKQIETGL 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,096
Number of Sequences: 438
Number of extensions: 1937
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)